Literature DB >> 18478231

Multiple objects tracking in fluorescence microscopy.

Yannis Kalaidzidis1.   

Abstract

Many processes in cell biology are connected to the movement of compact entities: intracellular vesicles and even single molecules. The tracking of individual objects is important for understanding cellular dynamics. Here we describe the tracking algorithms which have been developed in the non-biological fields and successfully applied to object detection and tracking in biological applications. The characteristics features of the different algorithms are compared.

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Year:  2008        PMID: 18478231      PMCID: PMC2798991          DOI: 10.1007/s00285-008-0180-4

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  41 in total

1.  Tracking single secretory granules in live chromaffin cells by evanescent-field fluorescence microscopy.

Authors:  J A Steyer; W Almers
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

2.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Rab conversion as a mechanism of progression from early to late endosomes.

Authors:  Jochen Rink; Eric Ghigo; Yannis Kalaidzidis; Marino Zerial
Journal:  Cell       Date:  2005-09-09       Impact factor: 41.582

4.  Cell motility as persistent random motion: theories from experiments.

Authors:  David Selmeczi; Stephan Mosler; Peter H Hagedorn; Niels B Larsen; Henrik Flyvbjerg
Journal:  Biophys J       Date:  2005-06-10       Impact factor: 4.033

5.  The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends.

Authors:  Jonne Helenius; Gary Brouhard; Yannis Kalaidzidis; Stefan Diez; Jonathon Howard
Journal:  Nature       Date:  2006-05-04       Impact factor: 49.962

6.  Visualization and quantification of vesicle trafficking on a three-dimensional cytoskeleton network in living cells.

Authors:  Victor Racine; Martin Sachse; Jean Salamero; Vincent Fraisier; Alain Trubuil; Jean-Baptiste Sibarita
Journal:  J Microsc       Date:  2007-03       Impact factor: 1.758

7.  Myosin V walks by lever action and Brownian motion.

Authors:  Katsuyuki Shiroguchi; Kazuhiko Kinosita
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

8.  Tracking kinesin-driven movements with nanometre-scale precision.

Authors:  J Gelles; B J Schnapp; M P Sheetz
Journal:  Nature       Date:  1988-02-04       Impact factor: 49.962

9.  Automated detection and tracking of individual and clustered cell surface low density lipoprotein receptor molecules.

Authors:  R N Ghosh; W W Webb
Journal:  Biophys J       Date:  1994-05       Impact factor: 4.033

10.  Rab7 associates with early endosomes to mediate sorting and transport of Semliki forest virus to late endosomes.

Authors:  Andreas Vonderheit; Ari Helenius
Journal:  PLoS Biol       Date:  2005-06-21       Impact factor: 8.029

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  9 in total

1.  Optimal-Flow Minimum-Cost Correspondence Assignment in Particle Flow Tracking.

Authors:  Alexandre Matov; Marcus M Edvall; Ge Yang; Gaudenz Danuser
Journal:  Comput Vis Image Underst       Date:  2011-04       Impact factor: 3.876

2.  Single-particle tracking photoactivated localization microscopy for mapping single-molecule dynamics.

Authors:  Suliana Manley; Jennifer M Gillette; Jennifer Lippincott-Schwartz
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 3.  High-density single-particle tracking: quantifying molecule organization and dynamics at the nanoscale.

Authors:  Jean-Baptiste Sibarita
Journal:  Histochem Cell Biol       Date:  2014-03-27       Impact factor: 4.304

4.  A Discontinuous Galerkin Model for Fluorescence Loss in Photobleaching.

Authors:  Christian V Hansen; Hans J Schroll; Daniel Wüstner
Journal:  Sci Rep       Date:  2018-01-23       Impact factor: 4.379

5.  Piecewise-Stationary Motion Modeling and Iterative Smoothing to Track Heterogeneous Particle Motions in Dense Environments.

Authors:  Philippe Roudot; Khuloud Jaqaman; Charles Kervrann; Gaudenz Danuser
Journal:  IEEE Trans Image Process       Date:  2017-11       Impact factor: 10.856

6.  Accumulative difference image protocol for particle tracking in fluorescence microscopy tested in mouse lymphonodes.

Authors:  Carlo E Villa; Michele Caccia; Laura Sironi; Laura D'Alfonso; Maddalena Collini; Ilaria Rivolta; Giuseppe Miserocchi; Tatiana Gorletta; Ivan Zanoni; Francesca Granucci; Giuseppe Chirico
Journal:  PLoS One       Date:  2010-08-17       Impact factor: 3.240

7.  Objective comparison of particle tracking methods.

Authors:  Nicolas Chenouard; Ihor Smal; Fabrice de Chaumont; Martin Maška; Ivo F Sbalzarini; Yuanhao Gong; Janick Cardinale; Craig Carthel; Stefano Coraluppi; Mark Winter; Andrew R Cohen; William J Godinez; Karl Rohr; Yannis Kalaidzidis; Liang Liang; James Duncan; Hongying Shen; Yingke Xu; Klas E G Magnusson; Joakim Jaldén; Helen M Blau; Perrine Paul-Gilloteaux; Philippe Roudot; Charles Kervrann; François Waharte; Jean-Yves Tinevez; Spencer L Shorte; Joost Willemse; Katherine Celler; Gilles P van Wezel; Han-Wei Dan; Yuh-Show Tsai; Carlos Ortiz de Solórzano; Jean-Christophe Olivo-Marin; Erik Meijering
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

8.  A quantitative comparison of single-dye tracking analysis tools using Monte Carlo simulations.

Authors:  Laura Weimann; Kristina A Ganzinger; James McColl; Kate L Irvine; Simon J Davis; Nicholas J Gay; Clare E Bryant; David Klenerman
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240

9.  Age-dependent labeling and imaging of insulin secretory granules.

Authors:  Anna Ivanova; Yannis Kalaidzidis; Ronald Dirkx; Mihail Sarov; Michael Gerlach; Britta Schroth-Diez; Andreas Müller; Yanmei Liu; Cordula Andree; Bernard Mulligan; Carla Münster; Thomas Kurth; Marc Bickle; Stephan Speier; Konstantinos Anastassiadis; Michele Solimena
Journal:  Diabetes       Date:  2013-08-08       Impact factor: 9.461

  9 in total

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