Literature DB >> 18477639

Bioinformatics, multiscale modeling and the IUPS Physiome Project.

Peter J Hunter1, Edmund J Crampin, Poul M F Nielsen.   

Abstract

Multiscale modeling is required for linking physiological processes operating at the organ and tissue levels to signal transduction networks and other subcellular processes. Several XML markup languages, including CellML, have been developed to encode models and to facilitate the building of model repositories and general purpose software tools. Progress in this area is described and illustrated with reference to the heart Physiome Project which aims to understand cardiac arrhythmias in terms of structure-function relations from proteins up to cells, tissues and organs.

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Year:  2008        PMID: 18477639     DOI: 10.1093/bib/bbn024

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  32 in total

1.  Computational molecular biology approaches to ligand-target interactions.

Authors:  Paola Lupieri; Chuong Ha Hung Nguyen; Zhaleh Ghaemi Bafghi; Alejandro Giorgetti; Paolo Carloni
Journal:  HFSP J       Date:  2009-03-10

Review 2.  Uncertainty quantification of fast sodium current steady-state inactivation for multi-scale models of cardiac electrophysiology.

Authors:  Pras Pathmanathan; Matthew S Shotwell; David J Gavaghan; Jonathan M Cordeiro; Richard A Gray
Journal:  Prog Biophys Mol Biol       Date:  2015-02-07       Impact factor: 3.667

3.  Commentaries on "Informatics and medicine: from molecules to populations".

Authors:  R B Altman; R Balling; J F Brinkley; E Coiera; F Consorti; M A Dhansay; A Geissbuhler; W Hersh; S Y Kwankam; N M Lorenzi; F Martin-Sanchez; G I Mihalas; Y Shahar; K Takabayashi; G Wiederhold
Journal:  Methods Inf Med       Date:  2008       Impact factor: 2.176

4.  Uniqueness and stability of action potential models during rest, pacing, and conduction using problem-solving environment.

Authors:  Leonid Livshitz; Yoram Rudy
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

5.  Energy-based analysis of biochemical cycles using bond graphs.

Authors:  Peter J Gawthrop; Edmund J Crampin
Journal:  Proc Math Phys Eng Sci       Date:  2014-11-08       Impact factor: 2.704

Review 6.  Multiscale modeling for biologists.

Authors:  Martin Meier-Schellersheim; Iain D C Fraser; Frederick Klauschen
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

Review 7.  Towards predictive modelling of the electrophysiology of the heart.

Authors:  Edward Vigmond; Fijoy Vadakkumpadan; Viatcheslav Gurev; Hermenegild Arevalo; Makarand Deo; Gernot Plank; Natalia Trayanova
Journal:  Exp Physiol       Date:  2009-03-06       Impact factor: 2.969

8.  Systems pharmacology and genome medicine: a future perspective.

Authors:  Aislyn D Wist; Seth I Berger; Ravi Iyengar
Journal:  Genome Med       Date:  2009-01-22       Impact factor: 11.117

Review 9.  Nutritional systems biology modeling: from molecular mechanisms to physiology.

Authors:  Albert A de Graaf; Andreas P Freidig; Baukje De Roos; Neema Jamshidi; Matthias Heinemann; Johan A C Rullmann; Kevin D Hall; Martin Adiels; Ben van Ommen
Journal:  PLoS Comput Biol       Date:  2009-11-26       Impact factor: 4.475

10.  A novel paradigm for cell and molecule interaction ontology: from the CMM model to IMGT-ONTOLOGY.

Authors:  Francesco Pappalardo; Marie-Paule Lefranc; Pier-Luigi Lollini; Santo Motta
Journal:  Immunome Res       Date:  2010-02-18
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