Literature DB >> 19720014

Uniqueness and stability of action potential models during rest, pacing, and conduction using problem-solving environment.

Leonid Livshitz1, Yoram Rudy.   

Abstract

Development and application of physiologically detailed dynamic models of the action potential (AP) and Ca2+ cycling in cardiac cells is a rapidly growing aspect of computational cardiac electrophysiology. Given the large scale of the nonlinear system involved, questions were recently raised regarding reproducibility, numerical stability, and uniqueness of model solutions, as well as ability of the model to simulate AP propagation in multicellular configurations. To address these issues, we reexamined ventricular models of myocyte AP developed in our laboratory with the following results. 1), Recognizing that the model involves a system of differential-algebraic equations, a procedure is developed for estimating consistent initial conditions that insure uniqueness and stability of the solution. 2), Model parameters that can be used to modify these initial conditions according to experimental values are identified. 3), A convergence criterion for steady-state solution is defined based on tracking the incremental contribution of each ion species to the membrane voltage. 4), Singularities in state variable formulations are removed analytically. 5), A biphasic current stimulus is implemented to completely eliminate stimulus artifact during long-term pacing over a broad range of frequencies. 6), Using the AP computed based on 1-5 above, an efficient scheme is developed for computing propagation in multicellular models.

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Year:  2009        PMID: 19720014      PMCID: PMC2749757          DOI: 10.1016/j.bpj.2009.05.062

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Time-dependent transients in an ionically based mathematical model of the canine atrial action potential.

Authors:  James Kneller; Rafael J Ramirez; Denis Chartier; Marc Courtemanche; Stanley Nattel
Journal:  Am J Physiol Heart Circ Physiol       Date:  2002-04       Impact factor: 4.733

Review 2.  Dynamics and consequences of potassium shifts in skeletal muscle and heart during exercise.

Authors:  O M Sejersted; G Sjøgaard
Journal:  Physiol Rev       Date:  2000-10       Impact factor: 37.312

3.  Model of intracellular calcium cycling in ventricular myocytes.

Authors:  Y Shiferaw; M A Watanabe; A Garfinkel; J N Weiss; A Karma
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

4.  Suppression of alternans and conduction blocks despite steep APD restitution: electrotonic, memory, and conduction velocity restitution effects.

Authors:  Elizabeth M Cherry; Flavio H Fenton
Journal:  Am J Physiol Heart Circ Physiol       Date:  2004-01-29       Impact factor: 4.733

5.  One-dimensional rabbit sinoatrial node models: benefits and limitations.

Authors:  Alan Garny; Peter Kohl; Peter J Hunter; Mark R Boyett; Denis Noble
Journal:  J Cardiovasc Electrophysiol       Date:  2003-10

6.  A mathematical treatment of integrated Ca dynamics within the ventricular myocyte.

Authors:  Thomas R Shannon; Fei Wang; José Puglisi; Christopher Weber; Donald M Bers
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

7.  Rate dependence and supernormality in excitability of guinea pig papillary muscle.

Authors:  J M Davidenko; R J Levi; G Maid; M V Elizari; M B Rosenbaum
Journal:  Am J Physiol       Date:  1990-08

Review 8.  A model of cardiac electrical activity incorporating ionic pumps and concentration changes.

Authors:  D DiFrancesco; D Noble
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1985-01-10       Impact factor: 6.237

9.  The effects of heart rate on the action potential of guinea-pig and human ventricular muscle.

Authors:  D Attwell; I Cohen; D A Eisner
Journal:  J Physiol       Date:  1981       Impact factor: 5.182

10.  Kinetic properties of the cardiac L-type Ca2+ channel and its role in myocyte electrophysiology: a theoretical investigation.

Authors:  Gregory M Faber; Jonathan Silva; Leonid Livshitz; Yoram Rudy
Journal:  Biophys J       Date:  2006-12-08       Impact factor: 4.033

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  27 in total

1.  Data-based theoretical identification of subcellular calcium compartments and estimation of calcium dynamics in cardiac myocytes.

Authors:  Leonid Livshitz; Karoly Acsai; Gudrun Antoons; Karin Sipido; Yoram Rudy
Journal:  J Physiol       Date:  2012-04-30       Impact factor: 5.182

2.  How the Hodgkin-Huxley equations inspired the Cardiac Physiome Project.

Authors:  Denis Noble; Alan Garny; Penelope J Noble
Journal:  J Physiol       Date:  2012-04-02       Impact factor: 5.182

3.  Dynamic clamp in cardiac and neuronal systems using RTXI.

Authors:  Francis A Ortega; Robert J Butera; David J Christini; John A White; Alan D Dorval
Journal:  Methods Mol Biol       Date:  2014

4.  Bond graph modelling of the cardiac action potential: implications for drift and non-unique steady states.

Authors:  Michael Pan; Peter J Gawthrop; Kenneth Tran; Joseph Cursons; Edmund J Crampin
Journal:  Proc Math Phys Eng Sci       Date:  2018-06-27       Impact factor: 2.704

5.  Illuminating Myocyte-Fibroblast Homotypic and Heterotypic Gap Junction Dynamics Using Dynamic Clamp.

Authors:  Tashalee R Brown; Trine Krogh-Madsen; David J Christini
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

6.  Reconstruction of Cell Surface Densities of Ion Pumps, Exchangers, and Channels from mRNA Expression, Conductance Kinetics, Whole-Cell Calcium, and Current-Clamp Voltage Recordings, with an Application to Human Uterine Smooth Muscle Cells.

Authors:  Jolene Atia; Conor McCloskey; Anatoly S Shmygol; David A Rand; Hugo A van den Berg; Andrew M Blanks
Journal:  PLoS Comput Biol       Date:  2016-04-22       Impact factor: 4.475

7.  Distribution of cardiac sodium channels in clusters potentiates ephaptic interactions in the intercalated disc.

Authors:  Echrak Hichri; Hugues Abriel; Jan P Kucera
Journal:  J Physiol       Date:  2018-01-09       Impact factor: 5.182

8.  Differential roles of two delayed rectifier potassium currents in regulation of ventricular action potential duration and arrhythmia susceptibility.

Authors:  Ryan A Devenyi; Francis A Ortega; Willemijn Groenendaal; Trine Krogh-Madsen; David J Christini; Eric A Sobie
Journal:  J Physiol       Date:  2016-12-28       Impact factor: 5.182

9.  Slow Delayed Rectifier Current Protects Ventricular Myocytes From Arrhythmic Dynamics Across Multiple Species: A Computational Study.

Authors:  Meera Varshneya; Ryan A Devenyi; Eric A Sobie
Journal:  Circ Arrhythm Electrophysiol       Date:  2018-10

10.  Genetic algorithm-based personalized models of human cardiac action potential.

Authors:  Dmitrii Smirnov; Andrey Pikunov; Roman Syunyaev; Ruslan Deviatiiarov; Oleg Gusev; Kedar Aras; Anna Gams; Aaron Koppel; Igor R Efimov
Journal:  PLoS One       Date:  2020-05-11       Impact factor: 3.240

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