Literature DB >> 20676304

Multiphase flow models of biogels from crawling cells to bacterial biofilms.

N G Cogan, Robert D Guy.   

Abstract

This article reviews multiphase descriptions of the fluid mechanics of cytoplasm in crawling cells and growing bacterial biofilms. These two systems involve gels, which are mixtures composed of a polymer network permeated by water. The fluid mechanics of these systems is essential to their biological function and structure. Their mathematical descriptions must account for the mechanics of the polymer, the water, and the interaction between these two phases. This review focuses on multiphase flow models because this framework is natural for including the relative motion between the phases, the exchange of material between phases, and the additional stresses within the network that arise from nonspecific chemical interactions and the action of molecular motors. These models have been successful in accounting for how different forces are generated and transmitted to achieve cell motion and biofilm growth and they have demonstrated how emergent structures develop though the interactions of the two phases. A short description of multiphase flow models of tumor growth is included to highlight the flexibility of the model in describing diverse biological applications.

Entities:  

Year:  2010        PMID: 20676304      PMCID: PMC2880026          DOI: 10.2976/1.3291142

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  73 in total

1.  Role of cohesion in the material description of biofilms.

Authors:  I Klapper; J Dockery
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-09-05

2.  Continuum model of cell adhesion and migration.

Authors:  Esa Kuusela; Wolfgang Alt
Journal:  J Math Biol       Date:  2008-05-17       Impact factor: 2.259

Review 3.  Implications of a poroelastic cytoplasm for the dynamics of animal cell shape.

Authors:  T J Mitchison; G T Charras; L Mahadevan
Journal:  Semin Cell Dev Biol       Date:  2008-02-07       Impact factor: 7.727

4.  Life and times of a cellular bleb.

Authors:  Guillaume T Charras; Margaret Coughlin; Timothy J Mitchison; L Mahadevan
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

5.  On the mechanics of the first cleavage division of the sea urchin egg.

Authors:  X He; M Dembo
Journal:  Exp Cell Res       Date:  1997-06-15       Impact factor: 3.905

6.  How myxobacteria glide.

Authors:  Charles Wolgemuth; Egbert Hoiczyk; Dale Kaiser; George Oster
Journal:  Curr Biol       Date:  2002-03-05       Impact factor: 10.834

7.  Numerical studies of unreactive contractile networks.

Authors:  M Dembo; M Maltrud; F Harlow
Journal:  Biophys J       Date:  1986-07       Impact factor: 4.033

8.  Agarose hydrogels as EPS models.

Authors:  M Strathmann; T Griebe; H C Flemming
Journal:  Water Sci Technol       Date:  2001       Impact factor: 1.915

9.  The role of the biofilm matrix in structural development.

Authors:  N G Cogan; James P Keener
Journal:  Math Med Biol       Date:  2004-06       Impact factor: 1.854

10.  Rapid actin transport during cell protrusion.

Authors:  Daniel Zicha; Ian M Dobbie; Mark R Holt; James Monypenny; Daniel Y H Soong; Colin Gray; Graham A Dunn
Journal:  Science       Date:  2003-04-04       Impact factor: 47.728

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  12 in total

1.  An immersed boundary method for two-phase fluids and gels and the swimming of Caenorhabditis elegans through viscoelastic fluids.

Authors:  Pilhwa Lee; Charles W Wolgemuth
Journal:  Phys Fluids (1994)       Date:  2016-01-06       Impact factor: 3.521

2.  A thin-film extensional flow model for biofilm expansion by sliding motility.

Authors:  Alexander Tam; J Edward F Green; Sanjeeva Balasuriya; Ee Lin Tek; Jennifer M Gardner; Joanna F Sundstrom; Vladimir Jiranek; Benjamin J Binder
Journal:  Proc Math Phys Eng Sci       Date:  2019-09-04       Impact factor: 2.704

3.  Multicomponent model of deformation and detachment of a biofilm under fluid flow.

Authors:  Giordano Tierra; Juan P Pavissich; Robert Nerenberg; Zhiliang Xu; Mark S Alber
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

4.  Computational Investigation of Ripple Dynamics in Biofilms in Flowing Systems.

Authors:  Nicholas G Cogan; Jian Li; Stefania Fabbri; Paul Stoodley
Journal:  Biophys J       Date:  2018-08-21       Impact factor: 4.033

5.  Pattern formation exhibited by biofilm formation within microfluidic chambers.

Authors:  N G Cogan; M R Donahue; Mark Whidden; Leonardo De La Fuente
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

6.  On a poroviscoelastic model for cell crawling.

Authors:  L S Kimpton; J P Whiteley; S L Waters; J M Oliver
Journal:  J Math Biol       Date:  2014-02-08       Impact factor: 2.259

7.  Transition from Actin-Driven to Water-Driven Cell Migration Depends on External Hydraulic Resistance.

Authors:  Yizeng Li; Sean X Sun
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

8.  An active poroelastic model for mechanochemical patterns in protoplasmic droplets of Physarum polycephalum.

Authors:  Markus Radszuweit; Harald Engel; Markus Bär
Journal:  PLoS One       Date:  2014-06-13       Impact factor: 3.240

9.  Swimming bacteria power microspin cycles.

Authors:  Alex E Hamby; Dhruv K Vig; Sasha Safonova; Charles W Wolgemuth
Journal:  Sci Adv       Date:  2018-12-19       Impact factor: 14.136

Review 10.  A comparison of computational models for eukaryotic cell shape and motility.

Authors:  William R Holmes; Leah Edelstein-Keshet
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

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