Literature DB >> 24150236

Long noncoding RNAs as metazoan developmental regulators.

Jamila I Horabin1.   

Abstract

The study of long noncoding RNAs (lncRNAs) is still in its infancy with more putative RNAs identified than those with ascribed functions. Defined as transcripts that are longer than 200 nucleotides without a coding sequence, their numbers are on the rise and may well challenge protein coding transcripts in number and diversity. lncRNAs are often expressed at low levels and their sequences are frequently poorly conserved, making it unclear if they are transcriptional noise or bonafide effectors. Despite these limitations, inroads into their functions are being made and it is clear they make a contribution in regulating all aspects of biology. The early verdict on their activity, however, suggests the majority function as chromatin modifiers. A good proportion show a connection to disease highlighting their importance and the need to determine their function. The focus of this review is on lncRNAs which influence developmental processes which in itself covers a large range of known activities.

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Year:  2013        PMID: 24150236     DOI: 10.1007/s10577-013-9382-8

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  92 in total

1.  Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila.

Authors:  A Akhtar; P B Becker
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

2.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

3.  The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.

Authors:  Stéphane Bertani; Silvia Sauer; Eugene Bolotin; Frank Sauer
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

Review 5.  Guided by RNAs: X-inactivation as a model for lncRNA function.

Authors:  John E Froberg; Lin Yang; Jeannie T Lee
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

6.  A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Authors:  Artyom A Alekseyenko; Shouyong Peng; Erica Larschan; Andrey A Gorchakov; Ok-Kyung Lee; Peter Kharchenko; Sean D McGrath; Charlotte I Wang; Elaine R Mardis; Peter J Park; Mitzi I Kuroda
Journal:  Cell       Date:  2008-08-22       Impact factor: 41.582

7.  B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes.

Authors:  Petro Yakovchuk; James A Goodrich; Jennifer F Kugel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-23       Impact factor: 11.205

8.  The reality of pervasive transcription.

Authors:  Michael B Clark; Paulo P Amaral; Felix J Schlesinger; Marcel E Dinger; Ryan J Taft; John L Rinn; Chris P Ponting; Peter F Stadler; Kevin V Morris; Antonin Morillon; Joel S Rozowsky; Mark B Gerstein; Claes Wahlestedt; Yoshihide Hayashizaki; Piero Carninci; Thomas R Gingeras; John S Mattick
Journal:  PLoS Biol       Date:  2011-07-12       Impact factor: 8.029

9.  2-D structure of the A region of Xist RNA and its implication for PRC2 association.

Authors:  Sylvain Maenner; Magali Blaud; Laetitia Fouillen; Anne Savoye; Virginie Marchand; Agnès Dubois; Sarah Sanglier-Cianférani; Alain Van Dorsselaer; Philippe Clerc; Philip Avner; Athanase Visvikis; Christiane Branlant
Journal:  PLoS Biol       Date:  2010-01-05       Impact factor: 8.029

10.  Mutations within lncRNAs are effectively selected against in fruitfly but not in human.

Authors:  Wilfried Haerty; Chris P Ponting
Journal:  Genome Biol       Date:  2013-05-27       Impact factor: 13.583

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  3 in total

1.  An interactive network of long non-coding RNAs facilitates the Drosophila sex determination decision.

Authors:  Brett B Mulvey; Ursula Olcese; Janel R Cabrera; Jamila I Horabin
Journal:  Biochim Biophys Acta       Date:  2014-06-18

Review 2.  There and Back Again: Hox Clusters Use Both DNA Strands.

Authors:  Elena L Novikova; Milana A Kulakova
Journal:  J Dev Biol       Date:  2021-07-15

Review 3.  Prenatal influences on temperament development: The role of environmental epigenetics.

Authors:  Maria A Gartstein; Michael K Skinner
Journal:  Dev Psychopathol       Date:  2017-12-12
  3 in total

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