Literature DB >> 18461480

Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging.

David P Bazett-Jones1, Ren Li, Eden Fussner, Rosa Nisman, Hesam Dehghani.   

Abstract

Electron microscopy has been the 'gold standard' of spatial resolution for studying the structure of the cell nucleus. Electron spectroscopic imaging (ESI) offers advantages over conventional transmission electron microscopy by eliminating the need for heavy-atom contrast agents. ESI also provides mass-dependent and element-specific information at high resolution, permitting the distinguishing of structures that are primarily composed of protein, DNA, or RNA. The technique can be applied to understand the structural consequences of epigenetic modifications, such as modified histones, on chromatin fiber morphology. ESI can also be applied to elucidate the multifunctional behavior of subnuclear 'organelles' such as the nucleolus and promyelocytic leukemia nuclear bodies.

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Year:  2008        PMID: 18461480     DOI: 10.1007/s10577-008-1237-3

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  34 in total

1.  Electron spectroscopic imaging of chromatin.

Authors:  D P Bazett-Jones; M J Hendzel
Journal:  Methods       Date:  1999-02       Impact factor: 3.608

2.  Direct visualization of a protein nuclear architecture.

Authors:  M J Hendzel; F Boisvert; D P Bazett-Jones
Journal:  Mol Biol Cell       Date:  1999-06       Impact factor: 4.138

3.  Same serial section correlative light and energy-filtered transmission electron microscopy.

Authors:  Ying Ren; Michael J Kruhlak; David P Bazett-Jones
Journal:  J Histochem Cytochem       Date:  2003-05       Impact factor: 2.479

4.  Protein and DNA requirements for the transcription factor IIIA-induced distortion of the 5 S rRNA gene promoter.

Authors:  M L Brown; G P Schroth; J M Gottesfeld; D P Bazett-Jones
Journal:  J Mol Biol       Date:  1996-10-11       Impact factor: 5.469

5.  Chromatin contributes to structural integrity of promyelocytic leukemia bodies through a SUMO-1-independent mechanism.

Authors:  Christopher H Eskiw; Graham Dellaire; David P Bazett-Jones
Journal:  J Biol Chem       Date:  2003-12-12       Impact factor: 5.157

6.  Probing intranuclear environments at the single-molecule level.

Authors:  David Grünwald; Robert M Martin; Volker Buschmann; David P Bazett-Jones; Heinrich Leonhardt; Ulrich Kubitscheck; M Cristina Cardoso
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

7.  Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.

Authors:  Séverine Chambeyron; Wendy A Bickmore
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

Review 8.  The nucleolus and the four ribonucleoproteins of translation.

Authors:  T Pederson; J C Politz
Journal:  J Cell Biol       Date:  2000-03-20       Impact factor: 10.539

9.  Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes.

Authors:  Andreas Bolzer; Gregor Kreth; Irina Solovei; Daniela Koehler; Kaan Saracoglu; Christine Fauth; Stefan Müller; Roland Eils; Christoph Cremer; Michael R Speicher; Thomas Cremer
Journal:  PLoS Biol       Date:  2005-04-26       Impact factor: 8.029

10.  Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods.

Authors:  Lindsay S Shopland; Carol V Johnson; Meg Byron; John McNeil; Jeanne B Lawrence
Journal:  J Cell Biol       Date:  2003-09-15       Impact factor: 10.539

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  17 in total

Review 1.  Coming to terms with chromatin structure.

Authors:  Liron Even-Faitelson; Vahideh Hassan-Zadeh; Zahra Baghestani; David P Bazett-Jones
Journal:  Chromosoma       Date:  2015-07-30       Impact factor: 4.316

Review 2.  Nuclear envelope-limited chromatin sheets (ELCS) and heterochromatin higher order structure.

Authors:  Donald E Olins; Ada L Olins
Journal:  Chromosoma       Date:  2009-06-12       Impact factor: 4.316

3.  DNA methylation is dispensable for changes in global chromatin architecture but required for chromocentre formation in early stem cell differentiation.

Authors:  Vahideh Hassan-Zadeh; Peter Rugg-Gunn; David P Bazett-Jones
Journal:  Chromosoma       Date:  2017-01-13       Impact factor: 4.316

4.  Towards an atlas of mammalian cell ultrastructure by cryo soft X-ray tomography.

Authors:  Waltraud G Müller; J Bernard Heymann; Kunio Nagashima; Peter Guttmann; Stephan Werner; Stefan Rehbein; Gerd Schneider; James G McNally
Journal:  J Struct Biol       Date:  2011-12-02       Impact factor: 2.867

5.  Nonlinear optical imaging and Raman microspectrometry of the cell nucleus throughout the cell cycle.

Authors:  Artem Pliss; Andrey N Kuzmin; Aliaksandr V Kachynski; Paras N Prasad
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.

Authors:  Ichiro Hiratani; Tyrone Ryba; Mari Itoh; Joy Rathjen; Michael Kulik; Bernadett Papp; Eden Fussner; David P Bazett-Jones; Kathrin Plath; Stephen Dalton; Peter D Rathjen; David M Gilbert
Journal:  Genome Res       Date:  2009-12-01       Impact factor: 9.043

7.  Global chromatin architecture reflects pluripotency and lineage commitment in the early mouse embryo.

Authors:  Kashif Ahmed; Hesam Dehghani; Peter Rugg-Gunn; Eden Fussner; Janet Rossant; David P Bazett-Jones
Journal:  PLoS One       Date:  2010-05-07       Impact factor: 3.240

8.  Determining molecular mass distributions and compositions of functionalized dendrimer nanoparticles.

Authors:  A A Sousa; M A Aronova; H Wu; H Sarin; G L Griffiths; R D Leapman
Journal:  Nanomedicine (Lond)       Date:  2009-06       Impact factor: 5.307

9.  Correlative fluorescence and EFTEM imaging of the organized components of the mammalian nucleus.

Authors:  Michael J Kruhlak
Journal:  Methods Mol Biol       Date:  2013

Review 10.  Regulation of Chromatin Organization in Cell Stemness: The Emerging Role of Long Non-coding RNAs.

Authors:  Hesam Dehghani
Journal:  Stem Cell Rev Rep       Date:  2021-06-28       Impact factor: 5.739

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