Literature DB >> 18433638

Time-resolved x-ray crystallography of heme proteins.

Vukica Srajer1, William E Royer.   

Abstract

Heme proteins, with their natural photosensitivity, are excellent systems for the application of time-resolved crystallographic methods. Ligand dissociation can be readily initiated by a short laser pulse with global structural changes probed at the atomic level by X-rays in real time. Third-generation synchrotrons provide 100-ps X-ray pulses of sufficient intensity for monitoring very fast processes. Successful application of such time-resolved crystallographic experiments requires that the structural changes being monitored are compatible with the crystal lattice. These techniques have recently permitted observing for the first time allosteric transitions in real time for a cooperative dimeric hemoglobin.

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Year:  2008        PMID: 18433638      PMCID: PMC3287071          DOI: 10.1016/S0076-6879(07)37019-5

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  31 in total

1.  New processing tools for weak and/or spatially overlapped macromolecular diffraction patterns.

Authors:  D Bourgeois
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Towards automated Laue data processing: application to the choice of optimal X-ray spectrum.

Authors:  D Bourgeois; U Wagner; M Wulff
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-08

3.  A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Authors:  Z Ren; B Perman; V Srajer; T Y Teng; C Pradervand; D Bourgeois; F Schotte; T Ursby; R Kort; M Wulff; K Moffat
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

4.  Protein conformational relaxation and ligand migration in myoglobin: a nanosecond to millisecond molecular movie from time-resolved Laue X-ray diffraction.

Authors:  V Srajer; Z Ren; T Y Teng; M Schmidt; T Ursby; D Bourgeois; C Pradervand; W Schildkamp; M Wulff; K Moffat
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

5.  Ligand-linked structural transitions in crystals of a cooperative dimeric hemoglobin.

Authors:  James E Knapp; William E Royer
Journal:  Biochemistry       Date:  2003-04-29       Impact factor: 3.162

6.  Immobilization of Scapharca HbI crystals improves data quality in time-resolved crystallographic experiments.

Authors:  James E Knapp; Vukica Srajer; Reinhard Pahl; William E Royer
Journal:  Micron       Date:  2004       Impact factor: 2.251

7.  Analysis of experimental time-resolved crystallographic data by singular value decomposition.

Authors:  Sudarshan Rajagopal; Marius Schmidt; Spencer Anderson; Hyotcherl Ihee; Keith Moffat
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-04-21

8.  Ligand migration pathway and protein dynamics in myoglobin: a time-resolved crystallographic study on L29W MbCO.

Authors:  Marius Schmidt; Karin Nienhaus; Reinhard Pahl; Angela Krasselt; Spencer Anderson; Fritz Parak; G Ulrich Nienhaus; Vukica Srajer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-05       Impact factor: 11.205

9.  Mutation of residue Phe97 to Leu disrupts the central allosteric pathway in Scapharca dimeric hemoglobin.

Authors:  A Pardanani; Q H Gibson; G Colotti; W E Royer
Journal:  J Biol Chem       Date:  1997-05-16       Impact factor: 5.157

10.  Restricting the ligand-linked heme movement in Scapharca dimeric hemoglobin reveals tight coupling between distal and proximal contributions to cooperativity.

Authors:  J E Knapp; Q H Gibson; L Cushing; W E Royer
Journal:  Biochemistry       Date:  2001-12-11       Impact factor: 3.162

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  8 in total

1.  Nanosecond time-resolved polarization spectroscopies: tools for probing protein reaction mechanisms.

Authors:  Eefei Chen; Robert A Goldbeck; David S Kliger
Journal:  Methods       Date:  2010-05-11       Impact factor: 3.608

Review 2.  Probing early events in ferrous cytochrome c folding with time-resolved natural and magnetic circular dichroism spectroscopies.

Authors:  Eefei Chen; Robert A Goldbeck; David S Kliger
Journal:  Curr Protein Pept Sci       Date:  2009-10       Impact factor: 3.272

3.  Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam.

Authors:  Rita Graceffa; R Paul Nobrega; Raul A Barrea; Sagar V Kathuria; Srinivas Chakravarthy; Osman Bilsel; Thomas C Irving
Journal:  J Synchrotron Radiat       Date:  2013-10-01       Impact factor: 2.616

4.  Biophysical characterization of the interaction of human albumin with an anionic porphyrin.

Authors:  Sarah C Rozinek; Robert J Thomas; Lorenzo Brancaleon
Journal:  Biochem Biophys Rep       Date:  2016-07-18

5.  Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice.

Authors:  Noriko Inoguchi; Nobuhiro Mizuno; Seiki Baba; Takashi Kumasaka; Chandrasekhar Natarajan; Jay F Storz; Hideaki Moriyama
Journal:  PLoS One       Date:  2017-03-31       Impact factor: 3.240

6.  Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering.

Authors:  Yunbeom Lee; Jong Goo Kim; Sang Jin Lee; Srinivasan Muniyappan; Tae Wu Kim; Hosung Ki; Hanui Kim; Junbeom Jo; So Ri Yun; Hyosub Lee; Kyung Won Lee; Seong Ok Kim; Marco Cammarata; Hyotcherl Ihee
Journal:  Nat Commun       Date:  2021-06-16       Impact factor: 14.919

7.  Observing heme doming in myoglobin with femtosecond X-ray absorption spectroscopy.

Authors:  M Levantino; H T Lemke; G Schirò; M Glownia; A Cupane; M Cammarata
Journal:  Struct Dyn       Date:  2015-05-29       Impact factor: 2.920

Review 8.  Using photocaging for fast time-resolved structural biology studies.

Authors:  Diana C F Monteiro; Emmanuel Amoah; Cromarte Rogers; Arwen R Pearson
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-09-22       Impact factor: 7.652

  8 in total

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