Literature DB >> 18430892

Specificity of ADAR-mediated RNA editing in newly identified targets.

Eva M Riedmann1, Sandy Schopoff, Jochen C Hartner, Michael F Jantsch.   

Abstract

Adenosine deaminases that act on RNA (ADARs) convert adenosines to inosine in both coding and noncoding double-stranded RNA. Deficiency in either ADAR1 or ADAR2 in mice is incompatible with normal life and development. While the ADAR2 knockout phenotype can be attributed to the lack of editing of the GluR-B receptor, the embryonic lethal phenotype caused by ADAR1 deficiency still awaits clarification. Recently, massive editing was observed in noncoding regions of mRNAs in mice and humans. Moreover, editing was observed in protein-coding regions of four mRNAs encoding FlnA, CyFip2, Blcap, and IGFBP7. Here, we investigate which of the two active mammalian ADAR enzymes is responsible for editing of these RNAs and whether any of them could possibly contribute to the phenotype observed in ADAR knockout mice. Editing of Blcap, FlnA, and some sites within B1 and B2 SINEs clearly depends on ADAR1, while other sites depend on ADAR2. Based on our data, substrate specificities can be further defined for ADAR1 and ADAR2. Future studies on the biological implications associated with a changed editing status of the studied ADAR targets will tell whether one of them turns out to be directly or indirectly responsible for the severe phenotype caused by ADAR1 deficiency.

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Year:  2008        PMID: 18430892      PMCID: PMC2390793          DOI: 10.1261/rna.923308

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

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3.  A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10.

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Journal:  Bioinformatics       Date:  2005-03-29       Impact factor: 6.937

4.  Modulation of microRNA processing and expression through RNA editing by ADAR deaminases.

Authors:  Weidong Yang; Thimmaiah P Chendrimada; Qingde Wang; Miyoko Higuchi; Peter H Seeburg; Ramin Shiekhattar; Kazuko Nishikura
Journal:  Nat Struct Mol Biol       Date:  2005-12-20       Impact factor: 15.369

Review 5.  RNA editing and hypermutation by adenosine deamination.

Authors:  B L Bass
Journal:  Trends Biochem Sci       Date:  1997-05       Impact factor: 13.807

6.  Regulation of serotonin-2C receptor G-protein coupling by RNA editing.

Authors:  C M Burns; H Chu; S M Rueter; L K Hutchinson; H Canton; E Sanders-Bush; R B Emeson
Journal:  Nature       Date:  1997-05-15       Impact factor: 49.962

Review 7.  Filamin A: phenotypic diversity.

Authors:  Stephen P Robertson
Journal:  Curr Opin Genet Dev       Date:  2005-06       Impact factor: 5.578

8.  RNA editing of human microRNAs.

Authors:  Matthew J Blow; Russell J Grocock; Stijn van Dongen; Anton J Enright; Ed Dicks; P Andrew Futreal; Richard Wooster; Michael R Stratton
Journal:  Genome Biol       Date:  2006-04-04       Impact factor: 13.583

9.  Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.

Authors:  Alekos Athanasiadis; Alexander Rich; Stefan Maas
Journal:  PLoS Biol       Date:  2004-11-09       Impact factor: 8.029

10.  Evolutionarily conserved human targets of adenosine to inosine RNA editing.

Authors:  Erez Y Levanon; Martina Hallegger; Yaron Kinar; Ronen Shemesh; Kristina Djinovic-Carugo; Gideon Rechavi; Michael F Jantsch; Eli Eisenberg
Journal:  Nucleic Acids Res       Date:  2005-02-24       Impact factor: 16.971

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  75 in total

1.  Age-related gene-specific changes of A-to-I mRNA editing in the human brain.

Authors:  A Nicholas; J P de Magalhaes; Y Kraytsberg; E K Richfield; E Y Levanon; K Khrapko
Journal:  Mech Ageing Dev       Date:  2010-06-09       Impact factor: 5.432

Review 2.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

Review 3.  Adenosine deaminases acting on RNA, RNA editing, and interferon action.

Authors:  Cyril X George; Zhenji Gan; Yong Liu; Charles E Samuel
Journal:  J Interferon Cytokine Res       Date:  2010-12-23       Impact factor: 2.607

4.  The fraction of RNA that folds into the correct branched secondary structure determines hepatitis delta virus type 3 RNA editing levels.

Authors:  Sarah D Linnstaedt; Wojciech K Kasprzak; Bruce A Shapiro; John L Casey
Journal:  RNA       Date:  2009-04-21       Impact factor: 4.942

5.  Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

Authors:  Georges St Laurent; Michael R Tackett; Sergey Nechkin; Dmitry Shtokalo; Denis Antonets; Yiannis A Savva; Rachel Maloney; Philipp Kapranov; Charles E Lawrence; Robert A Reenan
Journal:  Nat Struct Mol Biol       Date:  2013-09-29       Impact factor: 15.369

6.  Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR2.

Authors:  Soh Ishiguro; Josephine Galipon; Rintaro Ishii; Yutaka Suzuki; Shinji Kondo; Mariko Okada-Hatakeyama; Masaru Tomita; Kumiko Ui-Tei
Journal:  RNA Biol       Date:  2018-07-24       Impact factor: 4.652

7.  Positive correlation between ADAR expression and its targets suggests a complex regulation mediated by RNA editing in the human brain.

Authors:  Noa Liscovitch; Lily Bazak; Erez Y Levanon; Gal Chechik
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 8.  Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.

Authors:  Elisa Orecchini; Loredana Frassinelli; Silvia Galardi; Silvia Anna Ciafrè; Alessandro Michienzi
Journal:  Chromosome Res       Date:  2018-02-02       Impact factor: 5.239

9.  Large-scale detection and analysis of adenosine-to-inosine RNA editing during development in Plutella xylostella.

Authors:  Tao He; Wenjie Lei; Chang Ge; Peng Du; Li Wang; Fei Li
Journal:  Mol Genet Genomics       Date:  2014-12-10       Impact factor: 3.291

10.  Alu sequences in undifferentiated human embryonic stem cells display high levels of A-to-I RNA editing.

Authors:  Sivan Osenberg; Nurit Paz Yaacov; Michal Safran; Sharon Moshkovitz; Ronit Shtrichman; Ofra Sherf; Jasmine Jacob-Hirsch; Gilmor Keshet; Ninette Amariglio; Joseph Itskovitz-Eldor; Gideon Rechavi
Journal:  PLoS One       Date:  2010-06-21       Impact factor: 3.240

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