Literature DB >> 15149230

A synthetic reaction network: chemical amplification using nonequilibrium autocatalytic reactions coupled in time.

Cory J Gerdts1, David E Sharoyan, Rustem F Ismagilov.   

Abstract

This article reports a functional chemical reaction network synthesized in a microfluidic device. This chemical network performs chemical 5000-fold amplification and shows a threshold response. It operates in a feedforward manner in two stages: the output of the first stage becomes the input of the second stage. Each stage of amplification is performed by a reaction autocatalytic in Co(2+). The microfluidic network is used to maintain the two chemical reactions away from equilibrium and control the interactions between them in time. Time control is achieved as described previously (Angew. Chem., Int. Ed. 2003, 42, 768) by compartmentalizing the reaction mixture inside plugs which are aqueous droplets carried through a microchannel by an immiscible fluorinated fluid. Autocatalytic reaction displayed sensitivity to mixing; more rapid mixing corresponded to slower reaction rates. Synthetic chemical reaction networks may help understand the function of biochemical reaction networks, the goal of systems biology. They may also find practical applications. For example, the system described here may be used to detect visually, in a simple format, picoliter volumes of nanomolar concentrations of Co(2+), an environmental pollutant.

Entities:  

Year:  2004        PMID: 15149230     DOI: 10.1021/ja031689l

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Formation of droplets of alternating composition in microfluidic channels and applications to indexing of concentrations in droplet-based assays.

Authors:  Bo Zheng; Joshua D Tice; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2004-09-01       Impact factor: 6.986

2.  Using microfluidics to observe the effect of mixing on nucleation of protein crystals.

Authors:  Delai L Chen; Cory J Gerdts; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2005-07-13       Impact factor: 15.419

3.  On-chip titration of an anticoagulant argatroban and determination of the clotting time within whole blood or plasma using a plug-based microfluidic system.

Authors:  Helen Song; Hung-Wing Li; Matthew S Munson; Thuong G Van Ha; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2006-07-15       Impact factor: 6.986

Review 4.  Reactions in droplets in microfluidic channels.

Authors:  Helen Song; Delai L Chen; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-13       Impact factor: 15.336

5.  Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization.

Authors:  Cory J Gerdts; Valentina Tereshko; Maneesh K Yadav; Irina Dementieva; Frank Collart; Andrzej Joachimiak; Raymond C Stevens; Peter Kuhn; Anthony Kossiakoff; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-12-11       Impact factor: 15.336

6.  Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Authors:  Christian J Kastrup; Matthew K Runyon; Elena M Lucchetta; Jessica M Price; Rustem F Ismagilov
Journal:  Acc Chem Res       Date:  2008-01-25       Impact factor: 22.384

Review 7.  Opportunities for microfluidic technologies in synthetic biology.

Authors:  Shelly Gulati; Vincent Rouilly; Xize Niu; James Chappell; Richard I Kitney; Joshua B Edel; Paul S Freemont; Andrew J deMello
Journal:  J R Soc Interface       Date:  2009-05-27       Impact factor: 4.118

8.  Rate of mixing controls rate and outcome of autocatalytic processes: theory and microfluidic experiments with chemical reactions and blood coagulation.

Authors:  Rebecca R Pompano; Hung-Wing Li; Rustem F Ismagilov
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

9.  Rational design of functional and tunable oscillating enzymatic networks.

Authors:  Sergey N Semenov; Albert S Y Wong; R Martijn van der Made; Sjoerd G J Postma; Joost Groen; Hendrik W H van Roekel; Tom F A de Greef; Wilhelm T S Huck
Journal:  Nat Chem       Date:  2015-01-12       Impact factor: 24.427

Review 10.  Reaction-diffusion processes at the nano- and microscales.

Authors:  Irving R Epstein; Bing Xu
Journal:  Nat Nanotechnol       Date:  2016-04       Impact factor: 39.213

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