Literature DB >> 18408059

Detection of active butyrate-degrading microorganisms in methanogenic sludges by RNA-based stable isotope probing.

Masashi Hatamoto1, Hiroyuki Imachi, Yuto Yashiro, Akiyoshi Ohashi, Hideki Harada.   

Abstract

Butyrate-degrading bacteria in four methanogenic sludges were studied by RNA-based stable isotope probing. Bacterial populations in the (13)C-labeled rRNA fractions were distinct from unlabeled fractions, and Syntrophaceae species, Tepidanaerobacter sp., and Clostridium spp. dominated. These results suggest that diverse microbes were active in butyrate degradation under methanogenic conditions.

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Year:  2008        PMID： 18408059      PMCID： PMC2423034          DOI： 10.1128/AEM.00045-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

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Authors:  S Hattori; Y Kamagata; S Hanada; H Shoun
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

2.  Sequence-specific cleavage of 16S rRNA for rapid and quantitative detection of particular groups of anaerobes in bioreactors.

Authors:  Y Sekiguchi; Y Uyeno; A Sunaga; H Yoshida; Y Kamagata
Journal:  Water Sci Technol       Date:  2005       Impact factor: 1.915

3.  Detection of fatty acid beta-oxidizing syntrophic bacteria by fluorescence in situ hybridization.

Authors:  R J Menes; D Travers
Journal:  Water Sci Technol       Date:  2006       Impact factor: 1.915

4.  Phylogeny of acetate-utilizing microorganisms in soils along a nutrient gradient in the Florida Everglades.

Authors:  Ashvini Chauhan; Andrew Ogram
Journal:  Appl Environ Microbiol       Date:  2006-10       Impact factor: 4.792

5.  Effect of dilution rate on the microbial structure of a mesophilic butyrate-degrading methanogenic community during continuous cultivation.

Authors:  Yue-Qin Tang; Toru Shigematsu; Shigeru Morimura; Kenji Kida
Journal:  Appl Microbiol Biotechnol       Date:  2007-01-13       Impact factor: 4.813

6.  Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization.

Authors:  K H Hansen; B K Ahring; L Raskin
Journal:  Appl Environ Microbiol       Date:  1999-11       Impact factor: 4.792

7.  Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges.

Authors:  Masashi Hatamoto; Hiroyuki Imachi; Akiyoshi Ohashi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2006-12-22       Impact factor: 4.792

8.  Diversity of anaerobic microorganisms involved in long-chain fatty acid degradation in methanogenic sludges as revealed by RNA-based stable isotope probing.

Authors:  Masashi Hatamoto; Hiroyuki Imachi; Yuto Yashiro; Akiyoshi Ohashi; Hideki Harada
Journal:  Appl Environ Microbiol       Date:  2007-05-04       Impact factor: 4.792

9.  Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil.

Authors:  Tillmann Lueders; Bianca Pommerenke; Michael W Friedrich
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

10.  Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms.

Authors:  B E Jackson; V K Bhupathiraju; R S Tanner; C R Woese; M J McInerney
Journal:  Arch Microbiol       Date:  1999-01       Impact factor: 2.552
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  11 in total

1.  Syntrophomonadaceae-affiliated species as active butyrate-utilizing syntrophs in paddy field soil.

Authors:  Pengfei Liu; Qiongfen Qiu; Yahai Lu
Journal:  Appl Environ Microbiol       Date:  2011-04-01       Impact factor: 4.792

2.  Feedstocks affect the diversity and distribution of propionate CoA-transferase genes (pct) in anaerobic digesters.

Authors:  Yueh-Fen Li; Shan Wei; Zhongtang Yu
Journal:  Microb Ecol       Date:  2013-05-03       Impact factor: 4.552

3.  Crystalline iron oxides stimulate methanogenic benzoate degradation in marine sediment-derived enrichment cultures.

Authors:  David A Aromokeye; Oluwatobi E Oni; Jan Tebben; Xiuran Yin; Tim Richter-Heitmann; Jenny Wendt; Rolf Nimzyk; Sten Littmann; Daniela Tienken; Ajinkya C Kulkarni; Susann Henkel; Kai-Uwe Hinrichs; Marcus Elvert; Tilmann Harder; Sabine Kasten; Michael W Friedrich
Journal:  ISME J       Date:  2020-11-05       Impact factor: 10.302

4.  Evaluation of acidogenesis products' effect on biogas production performed with metagenomics and isotopic approaches.

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Journal:  Biotechnol Biofuels       Date:  2021-05-29       Impact factor: 6.040

5.  Methanogenic Archaea and oral infections - ways to unravel the black box.

Authors:  Hans-Peter Horz; Georg Conrads
Journal:  J Oral Microbiol       Date:  2011-02-23       Impact factor: 5.474

Review 6.  The discussion goes on: What is the role of Euryarchaeota in humans?

Authors:  H-P Horz; G Conrads
Journal:  Archaea       Date:  2010-12-30       Impact factor: 3.273

7.  Noteworthy Facts about a Methane-Producing Microbial Community Processing Acidic Effluent from Sugar Beet Molasses Fermentation.

Authors:  Aleksandra Chojnacka; Paweł Szczęsny; Mieczysław K Błaszczyk; Urszula Zielenkiewicz; Anna Detman; Agnieszka Salamon; Anna Sikora
Journal:  PLoS One       Date:  2015-05-22       Impact factor: 3.240

Review 8.  Quantifying the contribution of microbial immigration in engineered water systems.

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Journal:  Microbiome       Date:  2019-11-06       Impact factor: 14.650

9.  Ecogenomics-Based Mass Balance Model Reveals the Effects of Fermentation Conditions on Microbial Activity.

Authors:  Jinha Kim; Ran Mei; Fernanda P Wilson; Heyang Yuan; Benjamin T W Bocher; Wen-Tso Liu
Journal:  Front Microbiol       Date:  2020-12-02       Impact factor: 5.640

10.  Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics.

Authors:  Ryan M Ziels; Masaru K Nobu; Diana Z Sousa
Journal:  mSystems       Date:  2019-08-06       Impact factor: 6.496
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