Literature DB >> 21460111

Syntrophomonadaceae-affiliated species as active butyrate-utilizing syntrophs in paddy field soil.

Pengfei Liu1, Qiongfen Qiu, Yahai Lu.   

Abstract

DNA-based stable-isotope probing was applied to identify the active microorganisms involved in syntrophic butyrate oxidation in paddy field soil. After 14 and 21 days of incubation with [U-(13)C]butyrate, the bacterial Syntrophomonadaceae and the archaeal Methanosarcinaceae and Methanocellales incorporated substantial amounts of (13)C label into their nucleic acids. Unexpectedly, members of the Planctomycetes and Chloroflexi were also labeled with (13)C by yet-unclear mechanisms.

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Year:  2011        PMID： 21460111      PMCID： PMC3127591          DOI： 10.1128/AEM.00190-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  26 in total

1.  Composition of archaeal community in a paddy field as affected by rice cultivar and N fertilizer.

Authors:  Liqin Wu; Ke Ma; Qi Li; Xiubin Ke; Yahai Lu
Journal:  Microb Ecol       Date:  2009-06-30       Impact factor: 4.552

2.  In situ stable isotope probing of methanogenic archaea in the rice rhizosphere.

Authors:  Yahai Lu; Ralf Conrad
Journal:  Science       Date:  2005-08-12       Impact factor: 47.728

3.  Thermoanaerobacteriaceae oxidize acetate in methanogenic rice field soil at 50°C.

Authors:  Fanghua Liu; Ralf Conrad
Journal:  Environ Microbiol       Date:  2010-07-08       Impact factor: 5.491

4.  The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production.

Authors:  Jessica R Sieber; David R Sims; Cliff Han; Edwin Kim; Athanasios Lykidis; Alla L Lapidus; Erin McDonnald; Lars Rohlin; David E Culley; Robert Gunsalus; Michael J McInerney
Journal:  Environ Microbiol       Date:  2010-05-12       Impact factor: 5.491

5.  Detecting active methanogenic populations on rice roots using stable isotope probing.

Authors:  Yahai Lu; Tillmann Lueders; Michael W Friedrich; Ralf Conrad
Journal:  Environ Microbiol       Date:  2005-03       Impact factor: 5.491

6.  Syntrophomonas curvata sp. nov., an anaerobe that degrades fatty acids in co-culture with methanogens.

Authors:  Chunyang Zhang; Xiaoli Liu; Xiuzhu Dong
Journal:  Int J Syst Evol Microbiol       Date:  2004-05       Impact factor: 2.747

7.  Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia.

Authors:  Takeshi Yamada; Hiroyuki Imachi; Akiyoshi Ohashi; Hideki Harada; Satoshi Hanada; Yoichi Kamagata; Yuji Sekiguchi
Journal:  Int J Syst Evol Microbiol       Date:  2007-10       Impact factor: 2.747

8.  Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil.

Authors:  Tillmann Lueders; Bianca Pommerenke; Michael W Friedrich
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  Responses of methanogenic archaeal community to oxygen exposure in rice field soil.

Authors:  Yanli Yuan; Ralf Conrad; Yahai Lu
Journal:  Environ Microbiol Rep       Date:  2009-06-09       Impact factor: 3.541

10.  The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth.

Authors:  Michael J McInerney; Lars Rohlin; Housna Mouttaki; UnMi Kim; Rebecca S Krupp; Luis Rios-Hernandez; Jessica Sieber; Christopher G Struchtemeyer; Anamitra Bhattacharyya; John W Campbell; Robert P Gunsalus
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-18       Impact factor: 11.205
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  21 in total

1.  Syntrophic propionate oxidation via butyrate: a novel window of opportunity under methanogenic conditions.

Authors:  Jan Dolfing
Journal:  Appl Environ Microbiol       Date:  2013-07       Impact factor: 4.792

2.  Use of Acetate, Propionate, and Butyrate for Reduction of Nitrate and Sulfate and Methanogenesis in Microcosms and Bioreactors Simulating an Oil Reservoir.

Authors:  Chuan Chen; Yin Shen; Dongshan An; Gerrit Voordouw
Journal:  Appl Environ Microbiol       Date:  2017-03-17       Impact factor: 4.792

3.  Differences of methanogenesis between mesophilic and thermophilic in situ biogas-upgrading systems by hydrogen addition.

Authors:  Xianpu Zhu; Liumeng Chen; Yichao Chen; Qin Cao; Xiaofeng Liu; Dong Li
Journal:  J Ind Microbiol Biotechnol       Date:  2019-07-13       Impact factor: 3.346

4.  Syntrophic oxidation of propionate in rice field soil at 15 and 30°C under methanogenic conditions.

Authors:  Yanlu Gan; Qiongfen Qiu; Pengfei Liu; Junpeng Rui; Yahai Lu
Journal:  Appl Environ Microbiol       Date:  2012-05-11       Impact factor: 4.792

5.  Response of a rice paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses.

Authors:  Pengfei Liu; Yanxiang Yang; Zhe Lü; Yahai Lu
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

6.  Evaluation of acidogenesis products' effect on biogas production performed with metagenomics and isotopic approaches.

Authors:  Anna Detman; Michał Bucha; Laura Treu; Aleksandra Chojnacka; Łukasz Pleśniak; Agnieszka Salamon; Ewa Łupikasza; Robert Gromadka; Jan Gawor; Agnieszka Gromadka; Wojciech Drzewicki; Marta Jakubiak; Marek Janiga; Irena Matyasik; Mieczysław K Błaszczyk; Mariusz Orion Jędrysek; Stefano Campanaro; Anna Sikora
Journal:  Biotechnol Biofuels       Date:  2021-05-29       Impact factor: 6.040

7.  Noteworthy Facts about a Methane-Producing Microbial Community Processing Acidic Effluent from Sugar Beet Molasses Fermentation.

Authors:  Aleksandra Chojnacka; Paweł Szczęsny; Mieczysław K Błaszczyk; Urszula Zielenkiewicz; Anna Detman; Agnieszka Salamon; Anna Sikora
Journal:  PLoS One       Date:  2015-05-22       Impact factor: 3.240

8.  Biodiversity hot spot on a hot spot: novel extremophile diversity in Hawaiian fumaroles.

Authors:  Kate Wall; Jennifer Cornell; Richard W Bizzoco; Scott T Kelley
Journal:  Microbiologyopen       Date:  2015-01-06       Impact factor: 3.139

9.  Bacterial Diversity and Community Structure in Korean Ginseng Field Soil Are Shifted by Cultivation Time.

Authors:  Ngoc-Lan Nguyen; Yeon-Ju Kim; Van-An Hoang; Sathiyamoorthy Subramaniyam; Jong-Pyo Kang; Chang Ho Kang; Deok-Chun Yang
Journal:  PLoS One       Date:  2016-05-17       Impact factor: 3.240

10.  Draft Genome Sequence of Syntrophomonas wolfei subsp. methylbutyratica Strain 4J5T (JCM 14075), a Mesophilic Butyrate- and 2-Methylbutyrate-Degrading Syntroph.

Authors:  Takashi Narihiro; Masaru K Nobu; Hideyuki Tamaki; Yoichi Kamagata; Wen-Tso Liu
Journal:  Genome Announc       Date:  2016-03-03
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