Literature DB >> 18406649

Direct measurement of dipole-dipole/CSA cross-correlated relaxation by a constant-time experiment.

Yizhou Liu1, James H Prestegard.   

Abstract

Relaxation rates in NMR are usually measured by intensity modulation as a function of a relaxation delay during which the relaxation mechanism of interest is effective. Other mechanisms are often suppressed during the relaxation delay by pulse sequences which eliminate their effects, or cancel their effects when two data sets with appropriate combinations of relaxation rate effects are added. Cross-correlated relaxation (CCR) involving dipole-dipole and CSA interactions differ from auto-correlated relaxation (ACR) in that the signs of contributions can be changed by inverting the state of one spin involved in the dipole-dipole interaction. This property has been exploited previously using CPMG sequences to refocus CCR while ACR evolves. Here we report a new pulse scheme that instead eliminates intensity modulation by ACR and thus allows direct measurement of CCR. The sequence uses a constant time relaxation period for which the contribution of ACR does not change. An inversion pulse is applied at various points in the sequence to effect a decay that depends on CCR only. A 2-D experiment is also described in which chemical shift evolution in the indirect dimension can share the same constant period. This improves sensitivity by avoiding the addition of a separate indirect dimension acquisition time. We illustrate the measurement of residue specific CCR rates on the non-myristoylated yeast ARF1 protein and compare the results to those obtained following the conventional method of measuring the decay rates of the slow and fast-relaxing (15)N doublets. The performances of the two methods are also quantitatively evaluated by simulation. The analysis shows that the shared constant-time CCR (SCT-CCR) method significantly improves sensitivity.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18406649      PMCID: PMC2542487          DOI: 10.1016/j.jmr.2008.03.013

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  13 in total

1.  Symmetrical reconversion: measuring cross-correlation rates with enhanced accuracy.

Authors:  Philippe Pelupessy; Guillermo Minguez Espallargas; Geoffrey Bodenhausen
Journal:  J Magn Reson       Date:  2003-04       Impact factor: 2.229

2.  Direct measurement of the 15N CSA/dipolar relaxation interference from coupled HSQC spectra.

Authors:  Jennifer B Hall; Kwaku T Dayie; David Fushman
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

Review 3.  ARF proteins: roles in membrane traffic and beyond.

Authors:  Crislyn D'Souza-Schorey; Philippe Chavrier
Journal:  Nat Rev Mol Cell Biol       Date:  2006-05       Impact factor: 94.444

4.  Improved estimation of CSA-dipolar coupling cross-correlation rates from laboratory-frame relaxation experiments

Authors: 
Journal:  J Magn Reson       Date:  1998-10       Impact factor: 2.229

5.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

6.  Effective rotational correlation times of proteins from NMR relaxation interference.

Authors:  Donghan Lee; Christian Hilty; Gerhard Wider; Kurt Wüthrich
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

7.  Suppression of anti-TROSY lines in a sensitivity enhanced gradient selection TROSY scheme.

Authors:  Daniel Nietlispach
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

8.  Spin-state selection for increased confidence in cross-correlation rates measurements.

Authors:  Paul R Vasos; Jennifer B Hall; David Fushman
Journal:  J Biomol NMR       Date:  2005-02       Impact factor: 2.835

9.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

10.  Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation.

Authors:  Peter Damberg; Jüri Jarvet; Astrid Gräslund
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

View more
  15 in total

1.  Apparent tradeoff of higher activity in MMP-12 for enhanced stability and flexibility in MMP-3.

Authors:  Xiangyang Liang; A Arunima; Yingchu Zhao; Rajagopalan Bhaskaran; Anuradha Shende; Todd S Byrne; Jeremy Fleeks; Mark O Palmier; Steven R Van Doren
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

2.  MT1-MMP Binds Membranes by Opposite Tips of Its β Propeller to Position It for Pericellular Proteolysis.

Authors:  Tara C Marcink; Jayce A Simoncic; Bo An; Anna M Knapinska; Yan G Fulcher; Narahari Akkaladevi; Gregg B Fields; Steven R Van Doren
Journal:  Structure       Date:  2018-11-21       Impact factor: 5.006

3.  Solution NMR of a 463-residue phosphohexomutase: domain 4 mobility, substates, and phosphoryl transfer defect.

Authors:  Akella V S Sarma; Asokan Anbanandam; Allek Kelm; Ritcha Mehra-Chaudhary; Yirui Wei; Peiwu Qin; Yingying Lee; Mark V Berjanskii; Jacob A Mick; Lesa J Beamer; Steven R Van Doren
Journal:  Biochemistry       Date:  2012-01-17       Impact factor: 3.162

4.  Glycosylation Alters Dimerization Properties of a Cell-surface Signaling Protein, Carcinoembryonic Antigen-related Cell Adhesion Molecule 1 (CEACAM1).

Authors:  You Zhuo; Jeong-Yeh Yang; Kelley W Moremen; James H Prestegard
Journal:  J Biol Chem       Date:  2016-07-28       Impact factor: 5.157

5.  Charge-Triggered Membrane Insertion of Matrix Metalloproteinase-7, Supporter of Innate Immunity and Tumors.

Authors:  Stephen H Prior; Yan G Fulcher; Rama K Koppisetti; Alexander Jurkevich; Steven R Van Doren
Journal:  Structure       Date:  2015-10-01       Impact factor: 5.006

6.  Structural Characterization of a Heparan Sulfate Pentamer Interacting with LAR-Ig1-2.

Authors:  Qi Gao; Jeong-Yeh Yang; Kelley W Moremen; John G Flanagan; James H Prestegard
Journal:  Biochemistry       Date:  2018-04-03       Impact factor: 3.162

7.  Structures of domains I and IV from YbbR are representative of a widely distributed protein family.

Authors:  Adam W Barb; John R Cort; Jayaraman Seetharaman; Scott Lew; Hsiau-Wei Lee; Thomas Acton; Rong Xiao; Michael A Kennedy; Liang Tong; Gaetano T Montelione; James H Prestegard
Journal:  Protein Sci       Date:  2011-01-18       Impact factor: 6.725

8.  Structure and membrane interaction of myristoylated ARF1.

Authors:  Yizhou Liu; Richard A Kahn; James H Prestegard
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

9.  Interactions between PTB RRMs induce slow motions and increase RNA binding affinity.

Authors:  Caroline M Maynard; Kathleen B Hall
Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

10.  Solution structure of decorin-binding protein A from Borrelia burgdorferi.

Authors:  Xu Wang
Journal:  Biochemistry       Date:  2012-10-08       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.