Literature DB >> 33236172

Measuring compressibility in the optima AUC™ analytical ultracentrifuge.

Marielle Stoutjesdyk1, Emre Brookes2, Amy Henrickson3, Borries Demeler4,5.   

Abstract

A method is described to accurately measure the compressibility of liquids using an analytical ultracentrifuge. The method makes use of very large pressure gradients, which can be generated in the analytical ultracentrifuge at high speeds to induce a maximum compression signal. Taking advantage of the new Optima AUC, which offers 10 micron radial resolution, a novel calibration centerpiece for measuring rotor stretch, and a speed-ramping procedure, even the weak compressibility of liquids like water, typically considered to be incompressible, could be detected. A model using the standard expression for the secant-average bulk modulus describing the relative compression of a liquid in the analytical ultracentrifuge is derived. The model is a function of the loading volume and the hydrostatic pressure generated in the analytical ultracentrifuge, as well as the secant-average bulk modulus. The compressibility of water and toluene were measured and the linear secant-average bulk modulus and meniscus positions were fitted. In addition to the measurement of the compressibility of liquids, applications for this method include an improved prediction of boundary conditions for multi-speed analytical ultracentrifugation experiments to better describe highly heterogeneous systems with analytical speed-ramping procedures, and the prediction of radius-dependent density variations.

Entities:  

Keywords:  Analytical ultracentrifuge; Bulk modulus; Compressibility; Numerical modeling

Mesh:

Year:  2020        PMID: 33236172      PMCID: PMC7751350          DOI: 10.1007/s00249-020-01482-5

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  11 in total

1.  A model for sedimentation in inhomogeneous media. II. Compressibility of aqueous and organic solvents.

Authors:  Peter Schuck
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

2.  Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation.

Authors:  Weiming Cao; Borries Demeler
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

3.  Analysis of heterogeneity in molecular weight and shape by analytical ultracentrifugation using parallel distributed computing.

Authors:  Borries Demeler; Emre Brookes; Luitgard Nagel-Steger
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

4.  Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution for multicomponent reacting systems.

Authors:  Weiming Cao; Borries Demeler
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

5.  Two-dimensional grid optimization for sedimentation velocity analysis in the analytical ultracentrifuge.

Authors:  Haram Kim; Emre Brookes; Weiming Cao; Borries Demeler
Journal:  Eur Biophys J       Date:  2018-05-17       Impact factor: 1.733

6.  Multi-speed sedimentation velocity simulations with UltraScan-III.

Authors:  Tayler L Williams; Gary E Gorbet; Borries Demeler
Journal:  Eur Biophys J       Date:  2018-05-10       Impact factor: 1.733

7.  A calibration disk for the correction of radial errors from chromatic aberration and rotor stretch in the Optima AUC™ analytical ultracentrifuge.

Authors:  Marielle Stoutjesdyk; Amy Henrickson; Geoff Minors; Borries Demeler
Journal:  Eur Biophys J       Date:  2020-05-09       Impact factor: 1.733

8.  Multi-speed sedimentation velocity implementation in UltraScan-III.

Authors:  Gary E Gorbet; Subhashree Mohapatra; Borries Demeler
Journal:  Eur Biophys J       Date:  2018-04-02       Impact factor: 1.733

9.  A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.

Authors:  Huaying Zhao; Rodolfo Ghirlando; Carlos Alfonso; Fumio Arisaka; Ilan Attali; David L Bain; Marina M Bakhtina; Donald F Becker; Gregory J Bedwell; Ahmet Bekdemir; Tabot M D Besong; Catherine Birck; Chad A Brautigam; William Brennerman; Olwyn Byron; Agnieszka Bzowska; Jonathan B Chaires; Catherine T Chaton; Helmut Cölfen; Keith D Connaghan; Kimberly A Crowley; Ute Curth; Tina Daviter; William L Dean; Ana I Díez; Christine Ebel; Debra M Eckert; Leslie E Eisele; Edward Eisenstein; Patrick England; Carlos Escalante; Jeffrey A Fagan; Robert Fairman; Ron M Finn; Wolfgang Fischle; José García de la Torre; Jayesh Gor; Henning Gustafsson; Damien Hall; Stephen E Harding; José G Hernández Cifre; Andrew B Herr; Elizabeth E Howell; Richard S Isaac; Shu-Chuan Jao; Davis Jose; Soon-Jong Kim; Bashkim Kokona; Jack A Kornblatt; Dalibor Kosek; Elena Krayukhina; Daniel Krzizike; Eric A Kusznir; Hyewon Kwon; Adam Larson; Thomas M Laue; Aline Le Roy; Andrew P Leech; Hauke Lilie; Karolin Luger; Juan R Luque-Ortega; Jia Ma; Carrie A May; Ernest L Maynard; Anna Modrak-Wojcik; Yee-Foong Mok; Norbert Mücke; Luitgard Nagel-Steger; Geeta J Narlikar; Masanori Noda; Amanda Nourse; Tomas Obsil; Chad K Park; Jin-Ku Park; Peter D Pawelek; Erby E Perdue; Stephen J Perkins; Matthew A Perugini; Craig L Peterson; Martin G Peverelli; Grzegorz Piszczek; Gali Prag; Peter E Prevelige; Bertrand D E Raynal; Lenka Rezabkova; Klaus Richter; Alison E Ringel; Rose Rosenberg; Arthur J Rowe; Arne C Rufer; David J Scott; Javier G Seravalli; Alexandra S Solovyova; Renjie Song; David Staunton; Caitlin Stoddard; Katherine Stott; Holger M Strauss; Werner W Streicher; John P Sumida; Sarah G Swygert; Roman H Szczepanowski; Ingrid Tessmer; Ronald T Toth; Ashutosh Tripathy; Susumu Uchiyama; Stephan F W Uebel; Satoru Unzai; Anna Vitlin Gruber; Peter H von Hippel; Christine Wandrey; Szu-Huan Wang; Steven E Weitzel; Beata Wielgus-Kutrowska; Cynthia Wolberger; Martin Wolff; Edward Wright; Yu-Sung Wu; Jacinta M Wubben; Peter Schuck
Journal:  PLoS One       Date:  2015-05-21       Impact factor: 3.240

10.  Characterization of size, anisotropy, and density heterogeneity of nanoparticles by sedimentation velocity.

Authors:  Borries Demeler; Tich-Lam Nguyen; Gary E Gorbet; Virgil Schirf; Emre H Brookes; Paul Mulvaney; Ala'a O El-Ballouli; Jun Pan; Osman M Bakr; Aysha K Demeler; Blanca I Hernandez Uribe; Nabraj Bhattarai; Robert L Whetten
Journal:  Anal Chem       Date:  2014-07-18       Impact factor: 6.986

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  2 in total

1.  Analytical ultracentrifugation: still the gold standard that offers multiple solutions.

Authors:  Renwick C J Dobson; Trushar R Patel
Journal:  Eur Biophys J       Date:  2020-12       Impact factor: 1.733

2.  Calibrating analytical ultracentrifuges.

Authors:  Huaying Zhao; Ai Nguyen; Samuel C To; Peter Schuck
Journal:  Eur Biophys J       Date:  2021-01-04       Impact factor: 1.733

  2 in total

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