Literature DB >> 18385951

Kinetic models for stochastically modified ionic channels.

Aleksander Wozinski1, Jan Iwaniszewski.   

Abstract

Ionic channels form pores in biomembranes. These pores are large macromolecular structures. Due to thermal fluctuations of countless degrees-of-freedom of the biomembrane material, the actual form of the pores is permanently subject to modification. Furthermore, the arrival of an ion at the binding site can change this form by repolarizing the surrounding aminoacids. In any case the variations of the pore structure are stochastic. In this paper, we discuss the effect of such modifications on the channel conductivity. Applying a simple kinetic description, we show that stochastic variations in channel properties can significantly alter the ionic current, even leading to its substantial increase or decrease for the specific matching of some time-scales of the system.

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Year:  2008        PMID: 18385951      PMCID: PMC6275634          DOI: 10.2478/s11658-008-0010-0

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN: 1425-8153            Impact factor:   5.787


  15 in total

1.  Mechanisms of cation permeation in cardiac sodium channel: description by dynamic pore model.

Authors:  Y Kurata; R Sato; I Hisatome; S Imanishi
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Mean escape time over a fluctuating barrier.

Authors:  Jan Iwaniszewski
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-08-25

3.  Matching a diffusive and a kinetic approach for escape over a fluctuating barrier.

Authors: 
Journal:  Phys Rev Lett       Date:  1993-09-06       Impact factor: 9.161

4.  Thermodynamic fluctuations in protein molecules.

Authors:  A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

5.  Resonant activation in a simple kinetic model.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-07

6.  Escape over a fluctuating barrier: Limits of small and large correlation times.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1996-10

Review 7.  Modeling of ion channels.

Authors:  D G Levitt
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

8.  Fluctuations of barrier structure in ionic channels.

Authors:  P Läuger; W Stephan; E Frehland
Journal:  Biochim Biophys Acta       Date:  1980-10-16

9.  Rectifying conductance substates in a large conductance Ca(2+)-activated K+ channel: evidence for a fluctuating barrier mechanism.

Authors:  G W Moss; E Moczydlowski
Journal:  J Gen Physiol       Date:  1996-01       Impact factor: 4.086

10.  Ion permeation, divalent ion block, and chemical modification of single sodium channels. Description by single- and double-occupancy rate-theory models.

Authors:  R J French; J F Worley; W F Wonderlin; A S Kularatna; B K Krueger
Journal:  J Gen Physiol       Date:  1994-03       Impact factor: 4.086

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