Literature DB >> 18384809

Temperature-dependent Hammond behavior in a protein-folding reaction: analysis of transition-state movement and ground-state effects.

Humeyra Taskent1, Jae-Hyun Cho, Daniel P Raleigh.   

Abstract

Characterization of the transition-state ensemble and the nature of the free-energy barrier for protein folding are areas of intense activity and some controversy. A key issue that has emerged in recent years is the width of the free-energy barrier and the susceptibility of the transition state to movement. Here we report denaturant-induced and temperature-dependent folding studies of a small mixed alpha-beta protein, the N-terminal domain of L9 (NTL9). The folding of NTL9 was determined using fluorescence-detected stopped-flow fluorescence measurements conducted at seven different temperatures between 11 and 40 degrees C. Plots of the log of the observed first-order rate constant versus denaturant concentration, "chevron plots," displayed the characteristic V shape expected for two-state folding. There was no hint of deviation from linearity even at the lowest denaturant concentrations. The relative position of the transition state, as judged by the Tanford beta parameter, beta(T), shifts towards the native state as the temperature is increased. Analysis of the temperature dependence of the kinetic and equilibrium m values indicates that the effect is due to significant movement of the transition state and also includes a contribution from temperature-dependent ground-state effects. Analysis of the Leffler plots, plots of Delta G versus Delta G degrees, and their cross-interaction parameters confirms the transition-state movement. Since the protein is destabilized at high temperature, the shift represents a temperature-dependent Hammond effect. This provides independent confirmation of a recent theoretical prediction. The magnitude of the temperature-denaturant cross-interaction parameter is larger for NTL9 than has been reported for the few other cases studied. The implications for temperature-dependent studies of protein folding are discussed.

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Year:  2008        PMID: 18384809      PMCID: PMC2820404          DOI: 10.1016/j.jmb.2008.02.024

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  32 in total

1.  Rapid cooperative two-state folding of a miniature alpha-beta protein and design of a thermostable variant.

Authors:  Jia-Cherng Horng; Viktor Moroz; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

2.  Fine structure analysis of a protein folding transition state; distinguishing between hydrophobic stabilization and specific packing.

Authors:  Burcu Anil; Satoshi Sato; Jae-Hyun Cho; Daniel P Raleigh
Journal:  J Mol Biol       Date:  2005-10-06       Impact factor: 5.469

3.  Sensitivity of the folding/unfolding transition state ensemble of chymotrypsin inhibitor 2 to changes in temperature and solvent.

Authors:  Ryan Day; Valerie Daggett
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

4.  Shape of the free energy barriers for protein folding probed by multiple perturbation analysis.

Authors:  Manuela Schätzle; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2006-01-13       Impact factor: 5.469

5.  Global analysis of the thermal and chemical denaturation of the N-terminal domain of the ribosomal protein L9 in H2O and D2O. Determination of the thermodynamic parameters, deltaH(o), deltaS(o), and deltaC(o)p and evaluation of solvent isotope effects.

Authors:  B Kuhlman; D P Raleigh
Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

6.  Denaturant-induced movement of the transition state of protein folding revealed by high-pressure stopped-flow measurements.

Authors:  G Pappenberger; C Saudan; M Becker; A E Merbach; T Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

7.  Effect of point mutations on the folding of globular proteins.

Authors:  C R Matthews
Journal:  Methods Enzymol       Date:  1987       Impact factor: 1.600

Review 8.  Protein denaturation. C. Theoretical models for the mechanism of denaturation.

Authors:  C Tanford
Journal:  Adv Protein Chem       Date:  1970

9.  Formation of electrostatic interactions on the protein-folding pathway.

Authors:  M Oliveberg; A R Fersht
Journal:  Biochemistry       Date:  1996-02-27       Impact factor: 3.162

10.  Global analysis of the effects of temperature and denaturant on the folding and unfolding kinetics of the N-terminal domain of the protein L9.

Authors:  B Kuhlman; D L Luisi; P A Evans; D P Raleigh
Journal:  J Mol Biol       Date:  1998-12-18       Impact factor: 5.469

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  3 in total

1.  Characterization of the Folding of a 52-Knotted Protein Using Engineered Single-Tryptophan Variants.

Authors:  Hongyu Zhang; Sophie E Jackson
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

2.  Computational Estimation of Microsecond to Second Atomistic Folding Times.

Authors:  Upendra Adhikari; Barmak Mostofian; Jeremy Copperman; Sundar Raman Subramanian; Andrew A Petersen; Daniel M Zuckerman
Journal:  J Am Chem Soc       Date:  2019-04-12       Impact factor: 15.419

3.  In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome.

Authors:  Prajwal Ciryam; Richard I Morimoto; Michele Vendruscolo; Christopher M Dobson; Edward P O'Brien
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-19       Impact factor: 11.205

  3 in total

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