| Literature DB >> 18382660 |
Nadia Tinto1, Adriana Zagari, Marina Capuano, Alfonso De Simone, Valentina Capobianco, Gerardo Daniele, Michela Giugliano, Raffaella Spadaro, Adriana Franzese, Lucia Sacchetti.
Abstract
BACKGROUND: Maturity onset diabetes of the young type 2 (or GCK MODY) is a genetic form of diabetes mellitus provoked by mutations in the glucokinase gene (GCK). METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2008 PMID: 18382660 PMCID: PMC2270336 DOI: 10.1371/journal.pone.0001870
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primers used for PCR amplification of GCK exons and PCR conditions.
| Exons | Forward primer | Reverse primer | PCR annealing temperatures | PCR annealing times | PCR extension times (72°C) | Number of cycles |
| 1a |
|
| 60°C | 30” | 60” | 35 |
| 1b |
|
| 62°C | 20” | 60” | 30 |
| 1c |
|
| 54°C | 20” | 30” | 35 |
| 2 |
|
| 60°C | 15” | 30” | 30 |
| 3 |
|
| 57°C | 15” | 30” | 30 |
| 4 |
|
| 62°C | 20” | 60” | 30 |
| 5/6 |
|
| 57°C | 20” | 45” | 35 |
| 7 |
|
| 54°C | 20” | 45” | 35 |
| 8 |
|
| 51°C | 15” | 45” | 35 |
| 9 |
|
| 60°C | 20” | 45” | 35 |
| 10 |
|
| 55°C | 20” | 45” | 35 |
GenBank: accession n° (AH005826)
Taken from Stoffel M. et al. 1992 Proc Natl Acad Sci USA 89:7698–7702.
GCK mutations in children from south Italy affected by GCK MODY
| Patient code | Exons | cDNA mutation | AMINOACID CHANGE | Domain localization /Secondary structure | Effect on protein 3D-structure | References |
| M001 | 8 | c.868G>T | p.Glu290X Stop codon, truncated protein | Large domain/α7 helix | Truncated protein | Present study |
| M006 | ||||||
| M002 | 2 | c.115delA | p.Lys39fsX6 Frameshift and stop codon | Large domain/α2 helix | Truncated protein | Prisco et al 2000 |
| M003 | 9 | c.1174C>A | p.Arg392Ser Positively charged Arg → polar Ser | Large domain/α11 helix | Disruption of H-bond and salt-bridge network | Present study |
| M005 | 10 | c.1358C>A | p.Ser453X Stop codon | Small domain/α13 helix | Truncated protein Loss of C-term segment of α13 helix | Massa et al 2001 |
| M009 | 4 | c.409C>G | p.His137Asp Polar His → negatively charged Asp | Small domain/Last residue of α13 helix | Loss of α13 helix capping Variation of local interactions | Present study |
| M013 | 5 | c.485G>A | p.Gly162Asp Apolar Gly → negatively charged Asp | Small domain/β strand 7 | Introduction of a negative charge in a hydrophobic environment | Present study |
| M017 | 4 | c.369C>G | p.Phe123Leu Aromatic hydrophobic Phe → hydrophobic Leu | Small domain/α3 helix | Reorganization dictated by an introduction of small cavity into a hydrophobic environment | Present study |
| M018 | 3 | c.317_319delAGA | p.Gln106_Met107delinsLeu | Small domain/Edge β strand 4 | Perturbation of the β-sheet | Present study |
| M019 | 2 | c.210A>C | p.Glu70Asp Negatively charged Glu → negatively charged Asp | Connection/Loop spatially near α13 helix | Weakness of salt-link interaction with K458 (α13 helix) | Present study |
| M022 | 5 | c.502A>G | p.Thr168Ala polar Thr →nonpolar Ala | Small domain/Loop | Loss of H-bond between T168 and glucose | Present study |
| M023 | ||||||
| M024 | 7 | c.793G>A | p.Glu265Lys Negatively charged Glu → positively charged Lys | Large domain/Loop | E265 is between R36 and R43. positively-charged K, provokes a dramatic rearrangement | Bellane-Chantelot C et al 1998 |
| M025 | ||||||
| M028 | 4 | c.394G>A | p.Asp132Asn Negatively charged Asp →polar Asn | Small domain/α3 helix | Mild structural alterations | Present study |
| M029 |
GenBank: accession n° (AH005826)
The reference cDNA sequence was obtained from GenBank (NM_000162) and +1corresponds to the A of the ATG translation initiation codon
Swissprot accession n° P35557
Sibling pairs
Figure 1Distribution of the GCK mutations.
The structure of GCK in the closed form (PDB code: 1v4s) is shown as cyan and red ribbons that represent the small and large domain, respectively. Orange ribbons show the α13 helix. Yellow spheres are the mutation sites. Red and blue circles indicate clusters of mutations in the large and small domain, respectively.
Figure 2Structural features of mutations p.Phe123Leu and p.Asp168Ala GCK.
The structure of GCK in the closed form (PDB code: 1v4s) is represented by cyan ribbons. A) Mutation p.Phe123Leu. Phe123 is structured inside the hydrophobic core of the small domain. Yellow sticks represent hydrophobic residues that constitute the core. Phe123 and Leu123 are represented by red sticks (left and right panel, respectively). B) The sticks represent residue Thr168 and glucose. The right panels show a close-up view of the glucose-binding cleft for the wild-type (top) and for the Ala168 mutant (bottom).
Figure 3Structural features of mutations p.His137Asp, p.Arg392Ser and p.Gly162Asp GCK.
The structure of GCK in the closed form (PDB code:1v4s) is shown as cyan ribbons. A) p.His137Asp. Loop 141–144, which is involved in GKRP binding, is in red. His137 is at the end of the α3 helix. His137 is a capping residue of the helix, which is terminated by the interaction between side chain of His137 and Phe133. Asp137 (right) is not able to replace His137 interactions but adds a new interaction with Lys104. B) p.Gly162Asp. Yellow sticks represent hydrophobic residues that constitute the core. The location of Gly162 is marked in red (left of the panel). Asp162 is on the right of the panel. C) p.Arg392Ser. Residues Asp42, Glu236, Asn240 and Arg392 are represented by yellow sticks. H-bonds are shown in green. The wild-type enzyme and the p.Arg392Ser mutant are on the left and right of the panel, respectively.
Biochemical and phenotypic characteristics of the children affected by GCK MODY
| PATIENT CODE | SEX | BIRTH WEIGHT (kg) | AGE AT DIAGNOSIS (years) | BMI | FPG | 120 min OGTT | FPIR | HbA1c | TRIGLYCERIDES (mmol/L) | AFFECTED FAMILY MEMBER |
| M001 | F | 1.80 | 10 | −3.59 | IFG | NGT | 28.4 | 6.1 | 0.65 | F |
| M002 | F | 2.70 | 1 | ---- | IFG | n.a. | 33.4 | 6.4 | 2.26 | M |
| M003 | F | 3.30 | 8 | 0.67 | IFG | NGT | 112.7 | 6.7 | 0.99 | M |
| M005 | F | 2.95 | 9 | 0.26 | IFG | DM | 88.0 | 6.5 | 0.45 | F |
| M006 | M | 2.05 | 6 | 0.72 | IFG | IGT | 69.1 | 5.9 | 0.36 | M |
| M009 | M | 3.25 | 6 | 1.56 | DM | NGT | 39.4 | 5.6 | 0.80 | F |
| M013 | M | 2.97 | 7 | −1.80 | DM | IGT | 24.6 | 5.9 | 0.64 | M |
| M017 | M | 3.50 | 6 | −0.59 | IFG | NGT | n.a. | n.a. | 0.57 | M |
| M018 | F | 2.80 | 14 | −0.60 | IFG | NGT | 130.5 | 6.5 | 0.49 | F |
| M019 | F | 3.55 | 10 | 1.46 | IFG | IGT | 140.0 | 5.9 | 0.54 | M |
| M022 | F | 2.95 | 8 | 1.60 | IFG | NGT | n.a. | 6.2 | 0.66 | F |
| M023 | M | 3.40 | 9 | 0.67 | IFG | NGT | 156.0 | 6.4 | 0.82 | F |
| M024 | F | 2.75 | 12 | 1.29 | IFG | DM | 104.0 | 6.5 | 0.40 | F |
| M025 | F | 2.50 | 5 | 1.56 | IFG | IGT | 35.5 | 6.2 | 0.29 | F |
| M028 | F | 2.85 | 12 | 1.42 | IFG | NGT | n.a. | 5.4 | 0.52 | M |
| M029 | M | 2.91 | 7 | 0.74 | IFG | NGT | n.a. | 5.5 | 0.56 | M |
BMIz scores: (calculated in children aged 2–18 years), see Materials and methods
FPG: Fasting plasma glucose; (impaired fasting glucose [IFG] = 5.6–6.9 mmol/L; diabetes mellitus [DM] = ≥7.0 mmol/L)
OGTT: Oral glucose tolerance test (normal glucose tolerance [NGT] <7.8 mmol/L; impaired glucose tolerance [IGT] = 7.8–11.0 mmol/L; DM = ≥11.1 mmol/L)
FPIR: First phase insulin response (reference value: ≥60.0 µU/ml)
HbA1c: glycosylated haemoglobin (reference value: 4.3–5.9%)
Not available because patient M002 was <2 years old
Not fasting nursling
Not available