Literature DB >> 18349362

Development of an in-house loop-mediated isothermal amplification (LAMP) assay for detection of Mycobacterium tuberculosis and evaluation in sputum samples of Nepalese patients.

Basu Dev Pandey1,2, Ajay Poudel3, Tomoko Yoda4, Aki Tamaru4, Naozumi Oda5, Yukari Fukushima6, Binod Lekhak3, Basista Risal3, Bishnu Acharya1, Bishwa Sapkota7, Chie Nakajima6, Tooru Taniguchi8, Benjawan Phetsuksiri9, Yasuhiko Suzuki6.   

Abstract

A number of nucleic acid amplification assays (NAAs) have been employed to detect tubercle bacilli in clinical specimens for tuberculosis (TB) diagnosis. Among these, loop-mediated isothermal amplification (LAMP) is an NAA possessing superior isothermal reaction characteristics. In the present study, a set of six specific primers targeting the Mycobacterium tuberculosis 16S rRNA gene with high sensitivity was selected and a LAMP system (MTB-LAMP) was developed. Using this system, a total of 200 sputum samples from Nepalese patients were investigated. The sensitivity of MTB-LAMP in culture-positive samples was 100 % (96/96), and the specificity in culture-negative samples was 94.2 % (98/104, 95 % confidence interval 90.5-97.9 %). The positive and negative predictive values of MTB-LAMP were 94.1 and 100 %, respectively. These results indicate that this MTB-LAMP method may prove to be a powerful tool for the early diagnosis of TB.

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Year:  2008        PMID: 18349362     DOI: 10.1099/jmm.0.47499-0

Source DB:  PubMed          Journal:  J Med Microbiol        ISSN: 0022-2615            Impact factor:   2.472


  30 in total

1.  Improved polyacrylamide-based artificial sputum with formalin-fixed tubercle bacilli for training of tuberculosis microscopists.

Authors:  Hiroyuki Yamada; Satoshi Mitarai; Manik Rento Wahyunitisari; Ni Made Mertaniasih; Tetsuhiro Sugamoto; Kinuyo Chikamatsu; Akio Aono; Hiroko Matsumoto; Akiko Fujiki
Journal:  J Clin Microbiol       Date:  2011-08-03       Impact factor: 5.948

Review 2.  General and advanced diagnostic tools to detect Mycobacterium tuberculosis and their drug susceptibility: a review.

Authors:  Md A Gazi; Md R Islam; Mohammad G Kibria; Z Mahmud
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2015-01-06       Impact factor: 3.267

3.  Development and clinical evaluation of sdaA loop-mediated isothermal amplification assay for detection of Mycobacterium tuberculosis with an approach to prevent carryover contamination.

Authors:  Manoj Nimesh; Deepali Joon; Mandira Varma-Basil; Daman Saluja
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

Review 4.  Tuberculosis as part of the natural history of HIV infection in developing countries.

Authors:  Gabriel Chamie; Annie Luetkemeyer; Edwin Charlebois; Diane V Havlir
Journal:  Clin Infect Dis       Date:  2010-05-15       Impact factor: 9.079

5.  Loop-mediated isothermal amplification for rapid and reliable diagnosis of tuberculous meningitis.

Authors:  Khushboo J Nagdev; Rajpal S Kashyap; Manmohan M Parida; Rajkumar C Kapgate; Hemant J Purohit; Girdhar M Taori; Hatim F Daginawala
Journal:  J Clin Microbiol       Date:  2011-03-16       Impact factor: 5.948

6.  Evaluation of in-house loop-mediated isothermal amplification (LAMP) assay for rapid diagnosis of M. tuberculosis in pulmonary specimens.

Authors:  Sunil Sethi; Sunil Kumar Sethi; Sumeet Singh; Sunil Kumar Dhatwalia; Rakesh Yadav; Abhishek Mewara; Malkit Singh; Rupinder Tewari; Meera Sharma
Journal:  J Clin Lab Anal       Date:  2013-07       Impact factor: 2.352

7.  Identification of Mycobacterium tuberculosis clinical isolates in Bangladesh by a species distinguishable multiplex PCR.

Authors:  Chie Nakajima; Zeaur Rahim; Yukari Fukushima; Isamu Sugawara; Adri G M van der Zanden; Aki Tamaru; Yasuhiko Suzuki
Journal:  BMC Infect Dis       Date:  2010-05-15       Impact factor: 3.090

Review 8.  New diagnostic methods for tuberculosis.

Authors:  Melissa R Nyendak; Deborah A Lewinsohn; David M Lewinsohn
Journal:  Curr Opin Infect Dis       Date:  2009-04       Impact factor: 4.915

Review 9.  Point-of-care assays for tuberculosis: role of nanotechnology/microfluidics.

Authors:  ShuQi Wang; Fatih Inci; Gennaro De Libero; Amit Singhal; Utkan Demirci
Journal:  Biotechnol Adv       Date:  2013-01-26       Impact factor: 14.227

Review 10.  Tuberculosis in the developing world: recent advances in diagnosis with special consideration of extensively drug-resistant tuberculosis.

Authors:  Louis Grandjean; David A J Moore
Journal:  Curr Opin Infect Dis       Date:  2008-10       Impact factor: 4.915

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