Literature DB >> 18345660

Conformational analysis of beta-glycosidic linkages in 13C-labeled glucobiosides using inter-residue scalar coupling constants.

Ulrika Olsson1, Anthony S Serianni, Roland Stenutz.   

Abstract

Four beta-linked glucobioses selectively (13)C labeled at C1' or C2' have been prepared. The inter-residue coupling constants, J(CH), and J(CC), have been determined and related to the solution conformations of the disaccharides using Karplus-type relationships. Relying only on the experimental coupling constants, glycosidic linkage conformation in methyl alpha-sophoroside (methyl 2-O-beta-D-glucopyranosyl-alpha-D-glucopyranoside), methyl alpha-laminarabioside (methyl 3-O-beta-D-glucopyranosyl-alpha-D-glucopyranoside), and methyl alpha-cellobioside (methyl 4-O-beta-D-glucopyranosyl-alpha-D-glucopyranoside) were found to be close to those observed in the solid state (39 degrees < phi(H) < 41 degrees , -24 degrees < psi(H) < -36 degrees ). The laminarabioside and cellobioside were found to have conformations that accommodate an intramolecular hydrogen bond to O5' that is observed in the solid state. In all compounds, the exocyclic hydroxymethyl groups retain a conformation close to that observed in unsubstituted glucose (gt/gg 1:1). Methyl alpha-gentiobioside (methyl 6-O-beta-D-glucopyranosyl-alpha-D-glucopyranoside) shows greater flexibility at the psi-torsion than the other disaccharides, but the population distribution around the C5-C6 bond is essentially unaffected by substitution. None of the O2' hydroxyl groups of the beta-D-glucopyranosyl residues in any of the disaccharides appear to be involved in inter-residue hydrogen bonding since (1)JCH, (1)JCC, and (2)JCH values sensitive to C2'-O2' rotamer distribution remain close to those observed in methyl beta-D-glucopyranoside.

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Year:  2008        PMID: 18345660     DOI: 10.1021/jp710977k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  O-Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis.

Authors:  Toby Turney; Qingfeng Pan; Luke Sernau; Ian Carmichael; Wenhui Zhang; Xiaocong Wang; Robert J Woods; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2016-12-21       Impact factor: 2.991

2.  Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters.

Authors:  Stéphane Abel; François-Yves Dupradeau; E Prabhu Raman; Alexander D MacKerell; Massimo Marchi
Journal:  J Phys Chem B       Date:  2010-12-30       Impact factor: 2.991

3.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

4.  Conformational properties of methyl β-maltoside and methyl α- and β-cellobioside disaccharides.

Authors:  Elizabeth Hatcher; Elin Säwén; Göran Widmalm; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2010-12-15       Impact factor: 2.991

5.  Overexpression of a homogeneous oligosaccharide with 13C labeling by genetically engineered yeast strain.

Authors:  Yukiko Kamiya; Sayoko Yamamoto; Yasunori Chiba; Yoshifumi Jigami; Koichi Kato
Journal:  J Biomol NMR       Date:  2011-06-23       Impact factor: 2.835

6.  CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses.

Authors:  Olgun Guvench; Elizabeth R Hatcher; Richard M Venable; Richard W Pastor; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2009-08-20       Impact factor: 6.006

7.  NMR study of short β(1-3)-glucans provides insights into the structure and interaction with Dectin-1.

Authors:  Shinya Hanashima; Akemi Ikeda; Hiroshi Tanaka; Yoshiyuki Adachi; Naohito Ohno; Takashi Takahashi; Yoshiki Yamaguchi
Journal:  Glycoconj J       Date:  2013-11-29       Impact factor: 2.916

8.  Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution.

Authors:  William B O'Dell; David C Baker; Sylvia E McLain
Journal:  PLoS One       Date:  2012-10-02       Impact factor: 3.240

  8 in total

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