Literature DB >> 28001427

O-Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis.

Toby Turney, Qingfeng Pan1, Luke Sernau2, Ian Carmichael, Wenhui Zhang, Xiaocong Wang3, Robert J Woods3, Anthony S Serianni.   

Abstract

α- and β-d-glucopyranose monoacetates 1-3 were prepared with selective 13C enrichment in the O-acetyl side-chain, and ensembles of 13C-1H and 13C-13C NMR spin-couplings (J-couplings) were measured involving the labeled carbons. Density functional theory (DFT) was applied to a set of model structures to determine which J-couplings are sensitive to rotation of the ester bond θ. Eight J-couplings (1JCC, 2JCH, 2JCC, 3JCH, and 3JCC) were found to be sensitive to θ, and four equations were parametrized to allow quantitative interpretations of experimental J-values. Inspection of J-coupling ensembles in 1-3 showed that O-acetyl side-chain conformation depends on molecular context, with flanking groups playing a dominant role in determining the properties of θ in solution. To quantify these effects, ensembles of J-couplings containing four values were used to determine the precision and accuracy of several 2-parameter statistical models of rotamer distributions across θ in 1-3. The statistical method used to generate these models has been encoded in a newly developed program, MA'AT, which is available for public use. These models were compared to O-acetyl side-chain behavior observed in a representative sample of crystal structures, and in molecular dynamics (MD) simulations of O-acetylated model structures. While the functional form of the model had little effect on the precision of the calculated mean of θ in 1-3, platykurtic models were found to give more precise estimates of the width of the distribution about the mean (expressed as circular standard deviations). Validation of these 2-parameter models to interpret ensembles of redundant J-couplings using the O-acetyl system as a test case enables future extension of the approach to other flexible elements in saccharides, such as glycosidic linkage conformation.

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Year:  2016        PMID: 28001427      PMCID: PMC5556682          DOI: 10.1021/acs.jpcb.6b10028

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  17 in total

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2.  Development of lysozyme-resistance in Micrococcus lysodiekticus and its association with an increased O-acetyl content of the cell wall.

Authors:  W BRUMFITT; A C WARDLAW; J T PARK
Journal:  Nature       Date:  1958-06-28       Impact factor: 49.962

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Authors:  Ulrika Olsson; Anthony S Serianni; Roland Stenutz
Journal:  J Phys Chem B       Date:  2008-03-18       Impact factor: 2.991

4.  Conformation of acetate derivatives of sugars and other cyclic alcohols. Crystal structures, NMR studies, and molecular mechanics calculations of acetates. When is the exocyclic C-O bond eclipsed?

Authors:  Jorge González-Outeiriño; Rima Nasser; J Edgar Anderson
Journal:  J Org Chem       Date:  2005-04-01       Impact factor: 4.354

5.  N-acetyl side-chains in saccharides: NMR J-coupling equations sensitive to CH-NH and NH-CO bond conformations in 2-acetamido-2-deoxy-aldohexopyranosyl rings.

Authors:  Xiaosong Hu; Ian Carmichael; Anthony S Serianni
Journal:  J Org Chem       Date:  2010-08-06       Impact factor: 4.354

6.  Mycobacterium avium glycopeptidolipids require specific acetylation and methylation patterns for signaling through toll-like receptor 2.

Authors:  Lindsay Sweet; Wenhui Zhang; Heidi Torres-Fewell; Anthony Serianni; William Boggess; Jeffrey Schorey
Journal:  J Biol Chem       Date:  2008-09-29       Impact factor: 5.157

7.  A novel ganglioside, de-N-acetyl-GM3 (II3NeuNH2LacCer), acting as a strong promoter for epidermal growth factor receptor kinase and as a stimulator for cell growth.

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Journal:  J Biol Chem       Date:  1988-05-05       Impact factor: 5.157

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Authors:  Karl N Kirschner; Austin B Yongye; Sarah M Tschampel; Jorge González-Outeiriño; Charlisa R Daniels; B Lachele Foley; Robert J Woods
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

9.  Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born.

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Review 10.  Structural glycobiology: a game of snakes and ladders.

Authors:  Mari L DeMarco; Robert J Woods
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  5 in total

1.  Reconciling MA'AT and molecular dynamics models of linkage conformation in oligosaccharides.

Authors:  Reagan J Meredith; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  Phys Chem Chem Phys       Date:  2020-07-08       Impact factor: 3.676

2.  Synthesis and O-Glycosidic Linkage Conformational Analysis of 13C-Labeled Oligosaccharide Fragments of an Antifreeze Glycolipid.

Authors:  Wenhui Zhang; Reagan Meredith; Mi-Kyung Yoon; Xiaocong Wang; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Org Chem       Date:  2019-01-29       Impact factor: 4.354

3.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

4.  Effects of varying the 6-position oxidation state of hexopyranoses: a systematic comparative computational analysis of 48 monosaccharide stereoisomers.

Authors:  Alison E Vickman; Daniel C Ashley; Mu-Hyun Baik; Nicola L B Pohl
Journal:  J Mol Model       Date:  2017-06-27       Impact factor: 1.810

5.  Nonconventional NMR Spin-Coupling Constants in Oligosaccharide Conformational Modeling: Structural Dependencies Determined from Density Functional Theory Calculations.

Authors:  Reagan J Meredith; Ian Carmichael; Anthony S Serianni
Journal:  ACS Omega       Date:  2022-07-01
  5 in total

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