Literature DB >> 18345629

Hadamard amino-acid-type edited NMR experiment for fast protein resonance assignment.

Ewen Lescop1, Rodolfo Rasia, Bernhard Brutscher.   

Abstract

An original Hadamard-encoding scheme allows discrimination among seven amino acid types in a single two-dimensional NMR experiment. Combined with hyperdimensional NMR techniques, this presents a promising new method for fast, automated backbone resonance assignment of proteins in only a few hours time.

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Year:  2008        PMID： 18345629     DOI： 10.1021/ja800914h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


  19 in total

1.  Fragment-Based NMR Study of the Conformational Dynamics in the bHLH Transcription Factor Ascl1.

Authors:  Lorenzo Baronti; Tomáš Hošek; Sergio Gil-Caballero; Hadas Raveh-Amit; Eduardo O Calçada; Isabel Ayala; András Dinnyés; Isabella C Felli; Roberta Pierattelli; Bernhard Brutscher
Journal:  Biophys J       Date:  2017-04-11       Impact factor: 4.033

2.  Highly automated protein backbone resonance assignment within a few hours: the "BATCH" strategy and software package.

Authors:  Ewen Lescop; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2009-04-15       Impact factor: 2.835

3.  Aliasing in reduced dimensionality NMR spectra: (3,2)D HNHA and (4,2)D HN(COCA)NH experiments as examples.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2009-10-23       Impact factor: 2.835

4.  AUTOBA: automation of backbone assignment from HN(C)N suite of experiments.

Authors:  Aditi Borkar; Dinesh Kumar; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2011-05-29       Impact factor: 2.835

5.  New amino acid residue type identification experiments valid for protonated and deuterated proteins.

Authors:  David Pantoja-Uceda; Jorge Santoro
Journal:  J Biomol NMR       Date:  2012-09-04       Impact factor: 2.835

6.  A unified NMR strategy for high-throughput determination of backbone fold of small proteins.

Authors:  Dinesh Kumar; Anmol Gautam; Ramakrishna V Hosur
Journal:  J Struct Funct Genomics       Date:  2012-09-28

7.  BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.

Authors:  Zsofia Solyom; Melanie Schwarten; Leonhard Geist; Robert Konrat; Dieter Willbold; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2013-02-24       Impact factor: 2.835

8.  Resonance assignment of disordered protein with repetitive and overlapping sequence using combinatorial approach reveals initial structural propensities and local restrictions in the denatured state.

Authors:  Nikita Malik; Ashutosh Kumar
Journal:  J Biomol NMR       Date:  2016-09-01       Impact factor: 2.835

9.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

10.  Generalized indirect covariance NMR formalism for establishment of multidimensional spin correlations.

Authors:  David A Snyder; Rafael Brüschweiler
Journal:  J Phys Chem A       Date:  2009-11-19       Impact factor: 2.781
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