Literature DB >> 18342361

Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.

Shijun Mi1, Tao Cai, Yugang Hu, Yemiao Chen, Emily Hodges, Fangrui Ni, Liang Wu, Shan Li, Huanyu Zhou, Chengzu Long, She Chen, Gregory J Hannon, Yijun Qi.   

Abstract

Argonaute (AGO) proteins recruit small RNAs to form the core of RNAi effector complexes. Arabidopsis encodes ten AGO proteins and a large network of small RNAs. How these small RNAs are sorted into specific AGO complexes remains largely unknown. We have cataloged small RNAs resident in four AGO complexes. We found that AGO2 and AGO4 preferentially recruit small RNAs with a 5' terminal adenosine, whereas AGO1 harbors microRNAs (miRNAs) that favor a 5' terminal uridine. AGO5 predominantly binds small RNAs that initiate with cytosine. Changing the 5' terminal nucleotide of an miRNA predictably redirected it into a different AGO complex and alters its biological activity. These results reveal a role for small RNA sequences in assorting among AGO complexes. This suggests that specialization of AGO complexes might involve remodeling the 5' end-binding pocket to accept certain small RNA sequences, perhaps explaining the evolutionary drive for miRNAs to initiate with uridine.

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Year:  2008        PMID: 18342361      PMCID: PMC2981139          DOI: 10.1016/j.cell.2008.02.034

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

Review 1.  RNA interference.

Authors:  Gregory J Hannon
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  MicroRNAs and other tiny endogenous RNAs in C. elegans.

Authors:  Victor Ambros; Rosalind C Lee; Ann Lavanway; Peter T Williams; David Jewell
Journal:  Curr Biol       Date:  2003-05-13       Impact factor: 10.834

3.  Purified Argonaute2 and an siRNA form recombinant human RISC.

Authors:  Fabiola V Rivas; Niraj H Tolia; Ji-Joon Song; Juan P Aragon; Jidong Liu; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Nat Struct Mol Biol       Date:  2005-03-30       Impact factor: 15.369

4.  microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

Authors:  Edwards Allen; Zhixin Xie; Adam M Gustafson; James C Carrington
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

5.  Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation.

Authors:  Yijun Qi; Xingyue He; Xiu-Jie Wang; Oleksiy Kohany; Jerzy Jurka; Gregory J Hannon
Journal:  Nature       Date:  2006-09-24       Impact factor: 49.962

6.  Biochemical specialization within Arabidopsis RNA silencing pathways.

Authors:  Yijun Qi; Ahmet M Denli; Gregory J Hannon
Journal:  Mol Cell       Date:  2005-08-05       Impact factor: 17.970

7.  Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.

Authors:  N Baumberger; D C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-04       Impact factor: 11.205

8.  Fertile hypomorphic ARGONAUTE (ago1) mutants impaired in post-transcriptional gene silencing and virus resistance.

Authors:  Jean-Benoit Morel; Christian Godon; Philippe Mourrain; Christophe Béclin; Stéphanie Boutet; Frank Feuerbach; Florence Proux; Hervé Vaucheret
Journal:  Plant Cell       Date:  2002-03       Impact factor: 11.277

9.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

10.  ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation.

Authors:  Daniel Zilberman; Xiaofeng Cao; Steven E Jacobsen
Journal:  Science       Date:  2003-01-09       Impact factor: 47.728

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  563 in total

1.  Plant siRNAs from introns mediate DNA methylation of host genes.

Authors:  Dijun Chen; Yijun Meng; Chunhui Yuan; Lin Bai; Donglin Huang; Shaolei Lv; Ping Wu; Ling-Ling Chen; Ming Chen
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

2.  Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing.

Authors:  Manassawe Lertpanyasampatha; Lei Gao; Panida Kongsawadworakul; Unchera Viboonjun; Hervé Chrestin; Renyi Liu; Xuemei Chen; Jarunya Narangajavana
Journal:  Planta       Date:  2012-03-10       Impact factor: 4.116

3.  MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

Authors:  Jixian Zhai; Dong-Hoon Jeong; Emanuele De Paoli; Sunhee Park; Benjamin D Rosen; Yupeng Li; Alvaro J González; Zhe Yan; Sherry L Kitto; Michael A Grusak; Scott A Jackson; Gary Stacey; Douglas R Cook; Pamela J Green; D Janine Sherrier; Blake C Meyers
Journal:  Genes Dev       Date:  2011-12-01       Impact factor: 11.361

Review 4.  Dicing bodies.

Authors:  Qi Liu; Leilei Shi; Yuda Fang
Journal:  Plant Physiol       Date:  2011-10-24       Impact factor: 8.340

5.  Plant secondary siRNA production determined by microRNA-duplex structure.

Authors:  Pablo A Manavella; Daniel Koenig; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

6.  MicroRNA profiles and their control of male gametophyte development in rice.

Authors:  Hua Peng; Jun Chun; Tao-bo Ai; Yong-ao Tong; Rong Zhang; Ming-ming Zhao; Fang Chen; Sheng-hua Wang
Journal:  Plant Mol Biol       Date:  2012-03-09       Impact factor: 4.076

7.  High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.

Authors:  Natalie W Breakfield; David L Corcoran; Jalean J Petricka; Jeffrey Shen; Juthamas Sae-Seaw; Ignacio Rubio-Somoza; Detlef Weigel; Uwe Ohler; Philip N Benfey
Journal:  Genome Res       Date:  2011-09-22       Impact factor: 9.043

Review 8.  Conservation and divergence in plant microRNAs.

Authors:  Matthew W Jones-Rhoades
Journal:  Plant Mol Biol       Date:  2011-10-14       Impact factor: 4.076

Review 9.  The regulatory activities of plant microRNAs: a more dynamic perspective.

Authors:  Yijun Meng; Chaogang Shao; Huizhong Wang; Ming Chen
Journal:  Plant Physiol       Date:  2011-10-14       Impact factor: 8.340

10.  Oryza sativa RNA-Dependent RNA Polymerase 6 Contributes to Double-Strand Break Formation in Meiosis.

Authors:  Changzhen Liu; Yi Shen; Baoxiang Qin; Huili Wen; Jiawen Cheng; Fei Mao; Wenqing Shi; Ding Tang; Guijie Du; Yafei Li; Yufeng Wu; Zhukuan Cheng
Journal:  Plant Cell       Date:  2020-07-30       Impact factor: 11.277

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