Literature DB >> 18335996

Trapping a folding intermediate of the alpha-helix: stabilization of the pi-helix.

Ross Chapman1, John L Kulp, Anupam Patgiri, Neville R Kallenbach, Clay Bracken, Paramjit S Arora.   

Abstract

We report the design, synthesis, and characterization of a short peptide trapped in a pi-helix configuration. This high-energy conformation was nucleated by a preorganized pi-turn, which was obtained by replacing an N-terminal intramolecular main chain i and i + 5 hydrogen bond with a carbon-carbon bond. Our studies highlight the nucleation parameter as a key factor contributing to the relative instability of the pi-helix and allow us to estimate fundamental helix-coil transition parameters for this conformation.

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Year:  2008        PMID: 18335996      PMCID: PMC7183248          DOI: 10.1021/bi800136m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  29 in total

1.  Occurrence, conformational features and amino acid propensities for the pi-helix.

Authors:  M N Fodje; Salam Al-Karadaghi
Journal:  Protein Eng       Date:  2002-05

2.  The solvation interface is a determining factor in peptide conformational preferences.

Authors:  Eric J Sorin; Young Min Rhee; Michael R Shirts; Vijay S Pande
Journal:  J Mol Biol       Date:  2005-12-05       Impact factor: 5.469

3.  Solid-phase synthesis of hydrogen-bond surrogate-derived alpha-helices.

Authors:  Gianluca Dimartino; Deyun Wang; Ross N Chapman; Paramjit S Arora
Journal:  Org Lett       Date:  2005-06-09       Impact factor: 6.005

4.  Generalized Mathematical Relationships for Polypeptide Chain Helices: The Coordinates of the II Helix.

Authors:  B W Low; H J Grenville-Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1953-08       Impact factor: 11.205

5.  Nucleation and stability of hydrogen-bond surrogate-based alpha-helices.

Authors:  Deyun Wang; Kang Chen; Gianluca Dimartino; Paramjit S Arora
Journal:  Org Biomol Chem       Date:  2006-11-21       Impact factor: 3.876

6.  The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain.

Authors:  L PAULING; R B COREY; H R BRANSON
Journal:  Proc Natl Acad Sci U S A       Date:  1951-04       Impact factor: 11.205

Review 7.  Conformation of polypeptides and proteins.

Authors:  G N Ramachandran; V Sasisekharan
Journal:  Adv Protein Chem       Date:  1968

8.  Curious structure in "canonical" alanine-based peptides.

Authors:  W A Shirley; C L Brooks
Journal:  Proteins       Date:  1997-05

9.  A designed Zn2+-binding amphiphilic polypeptide: energetic consequences of pi-helicity.

Authors:  D M Morgan; D G Lynn; H Miller-Auer; S C Meredith
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

10.  Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure.

Authors:  A Pardi; M Billeter; K Wüthrich
Journal:  J Mol Biol       Date:  1984-12-15       Impact factor: 5.469

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  13 in total

1.  Application of ring-closing metathesis to Grb2 SH3 domain-binding peptides.

Authors:  Fa Liu; Alessio Giubellino; Philip C Simister; Wenjian Qian; Michael C Giano; Stephan M Feller; Donald P Bottaro; Terrence R Burke
Journal:  Biopolymers       Date:  2011       Impact factor: 2.505

2.  Design, synthesis and protein-targeting properties of thioether-linked hydrogen bond surrogate helices.

Authors:  Andrew B Mahon; Paramjit S Arora
Journal:  Chem Commun (Camb)       Date:  2011-09-28       Impact factor: 6.222

3.  Penetration depth of surfactant peptide KL4 into membranes is determined by fatty acid saturation.

Authors:  Vijay C Antharam; Douglas W Elliott; Frank D Mills; R Suzanne Farver; Edward Sternin; Joanna R Long
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

4.  Characteristic structural parameters for the γ-peptide 14-helix: importance of subunit preorganization.

Authors:  Li Guo; Weicheng Zhang; Andrew G Reidenbach; Michael W Giuliano; Ilia A Guzei; Lara C Spencer; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-05-12       Impact factor: 15.336

5.  Impact of ion binding on poly-L-lysine (un)folding energy landscape and kinetics.

Authors:  Kan Xiong; Sanford A Asher
Journal:  J Phys Chem B       Date:  2012-06-06       Impact factor: 2.991

6.  Molecular dynamics studies of transportan 10 (tp10) interacting with a POPC lipid bilayer.

Authors:  Christina M Dunkin; Antje Pokorny; Paulo F Almeida; Hee-Seung Lee
Journal:  J Phys Chem B       Date:  2010-12-31       Impact factor: 2.991

7.  Nucleation effects in peptide foldamers.

Authors:  Anupam Patgiri; Stephen T Joy; Paramjit S Arora
Journal:  J Am Chem Soc       Date:  2012-07-05       Impact factor: 15.419

8.  Interactions of the C-terminus of lung surfactant protein B with lipid bilayers are modulated by acyl chain saturation.

Authors:  Vijay C Antharam; R Suzanne Farver; Anna Kuznetsova; Katherine H Sippel; Frank D Mills; Douglas W Elliott; Edward Sternin; Joanna R Long
Journal:  Biochim Biophys Acta       Date:  2008-07-25

9.  Hydrogen Bond Surrogate Stabilization of β-Hairpins.

Authors:  Nicholas Sawyer; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2018-07-18       Impact factor: 5.100

10.  Application of ring-closing metathesis macrocyclization to the development of Tsg101-binding antagonists.

Authors:  Fa Liu; Andrew G Stephen; Abdul A Waheed; Eric O Freed; Robert J Fisher; Terrence R Burke
Journal:  Bioorg Med Chem Lett       Date:  2009-10-29       Impact factor: 2.823

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