Literature DB >> 18330486

High incidence of interchromosomal transpositions in the evolutionary history of a subset of or genes in Drosophila.

Inês C Conceição1, Montserrat Aguadé.   

Abstract

In insects, the odorant receptor (Or) multigene family is an intermediate-sized family with genes present in all chromosomes, indicating that duplication followed by interchromosomal transposition played an important role in the early stages of the family evolution. Here, we have explored the occurrence of interchromosomal transpositions in more recent stages through the comparative analysis of a subset of Or genes in Drosophila, where the gene content of chromosomal arms is highly conserved. The studied subset consisted of 11 Or genes located on the left arm of chromosome 3 (Muller's D element) in D. melanogaster. Our study focused on the number and chromosomal arm location of these members of the family across the 12 Drosophila species with complete genome sequences. In contrast to previous results from in situ hybridization comparative mapping that were mainly based on single-copy genes, our study, based on members of a multigene family of moderate size, revealed repeated interchromosomal transposition events and a complex history of some of the studied genes.

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Year:  2008        PMID: 18330486     DOI: 10.1007/s00239-008-9071-y

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  33 in total

1.  Vagaries of the molecular clock.

Authors:  F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

2.  Functional conservation of an insect odorant receptor gene across 250 million years of evolution.

Authors:  Walton D Jones; Thuy-Ai T Nguyen; Brian Kloss; Kevin J Lee; Leslie B Vosshall
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

3.  ProbCons: Probabilistic consistency-based multiple sequence alignment.

Authors:  Chuong B Do; Mahathi S P Mahabhashyam; Michael Brudno; Serafim Batzoglou
Journal:  Genome Res       Date:  2005-02       Impact factor: 9.043

4.  Five Drosophila genomes reveal nonneutral evolution and the signature of host specialization in the chemoreceptor superfamily.

Authors:  Carolyn S McBride; J Roman Arguello; Brian C O'Meara
Journal:  Genetics       Date:  2007-11       Impact factor: 4.562

5.  How malleable is the eukaryotic genome? Extreme rate of chromosomal rearrangement in the genus Drosophila.

Authors:  J M Ranz; F Casals; A Ruiz
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

6.  Molecular organization of the X chromosome in different species of the obscura group of Drosophila.

Authors:  C Segarra; M Aguadé
Journal:  Genetics       Date:  1992-03       Impact factor: 4.562

Review 7.  Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates.

Authors:  Yoshihito Niimura; Masatoshi Nei
Journal:  J Hum Genet       Date:  2006-04-11       Impact factor: 3.172

8.  Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda.

Authors:  Carolina Bartolomé; Brian Charlesworth
Journal:  Genetics       Date:  2006-03-17       Impact factor: 4.562

9.  Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster.

Authors:  Hugh M Robertson; Coral G Warr; John R Carlson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-07       Impact factor: 11.205

10.  Evolution of genes and genomes on the Drosophila phylogeny.

Authors:  Andrew G Clark; Michael B Eisen; Douglas R Smith; Casey M Bergman; Brian Oliver; Therese A Markow; Thomas C Kaufman; Manolis Kellis; William Gelbart; Venky N Iyer; Daniel A Pollard; Timothy B Sackton; Amanda M Larracuente; Nadia D Singh; Jose P Abad; Dawn N Abt; Boris Adryan; Montserrat Aguade; Hiroshi Akashi; Wyatt W Anderson; Charles F Aquadro; David H Ardell; Roman Arguello; Carlo G Artieri; Daniel A Barbash; Daniel Barker; Paolo Barsanti; Phil Batterham; Serafim Batzoglou; Dave Begun; Arjun Bhutkar; Enrico Blanco; Stephanie A Bosak; Robert K Bradley; Adrianne D Brand; Michael R Brent; Angela N Brooks; Randall H Brown; Roger K Butlin; Corrado Caggese; Brian R Calvi; A Bernardo de Carvalho; Anat Caspi; Sergio Castrezana; Susan E Celniker; Jean L Chang; Charles Chapple; Sourav Chatterji; Asif Chinwalla; Alberto Civetta; Sandra W Clifton; Josep M Comeron; James C Costello; Jerry A Coyne; Jennifer Daub; Robert G David; Arthur L Delcher; Kim Delehaunty; Chuong B Do; Heather Ebling; Kevin Edwards; Thomas Eickbush; Jay D Evans; Alan Filipski; Sven Findeiss; Eva Freyhult; Lucinda Fulton; Robert Fulton; Ana C L Garcia; Anastasia Gardiner; David A Garfield; Barry E Garvin; Greg Gibson; Don Gilbert; Sante Gnerre; Jennifer Godfrey; Robert Good; Valer Gotea; Brenton Gravely; Anthony J Greenberg; Sam Griffiths-Jones; Samuel Gross; Roderic Guigo; Erik A Gustafson; Wilfried Haerty; Matthew W Hahn; Daniel L Halligan; Aaron L Halpern; Gillian M Halter; Mira V Han; Andreas Heger; LaDeana Hillier; Angie S Hinrichs; Ian Holmes; Roger A Hoskins; Melissa J Hubisz; Dan Hultmark; Melanie A Huntley; David B Jaffe; Santosh Jagadeeshan; William R Jeck; Justin Johnson; Corbin D Jones; William C Jordan; Gary H Karpen; Eiko Kataoka; Peter D Keightley; Pouya Kheradpour; Ewen F Kirkness; Leonardo B Koerich; Karsten Kristiansen; Dave Kudrna; Rob J Kulathinal; Sudhir Kumar; Roberta Kwok; Eric Lander; Charles H Langley; Richard Lapoint; Brian P Lazzaro; So-Jeong Lee; Lisa Levesque; Ruiqiang Li; Chiao-Feng Lin; Michael F Lin; Kerstin Lindblad-Toh; Ana Llopart; Manyuan Long; Lloyd Low; Elena Lozovsky; Jian Lu; Meizhong Luo; Carlos A Machado; Wojciech Makalowski; Mar Marzo; Muneo Matsuda; Luciano Matzkin; Bryant McAllister; Carolyn S McBride; Brendan McKernan; Kevin McKernan; Maria Mendez-Lago; Patrick Minx; Michael U Mollenhauer; Kristi Montooth; Stephen M Mount; Xu Mu; Eugene Myers; Barbara Negre; Stuart Newfeld; Rasmus Nielsen; Mohamed A F Noor; Patrick O'Grady; Lior Pachter; Montserrat Papaceit; Matthew J Parisi; Michael Parisi; Leopold Parts; Jakob S Pedersen; Graziano Pesole; Adam M Phillippy; Chris P Ponting; Mihai Pop; Damiano Porcelli; Jeffrey R Powell; Sonja Prohaska; Kim Pruitt; Marta Puig; Hadi Quesneville; Kristipati Ravi Ram; David Rand; Matthew D Rasmussen; Laura K Reed; Robert Reenan; Amy Reily; Karin A Remington; Tania T Rieger; Michael G Ritchie; Charles Robin; Yu-Hui Rogers; Claudia Rohde; Julio Rozas; Marc J Rubenfield; Alfredo Ruiz; Susan Russo; Steven L Salzberg; Alejandro Sanchez-Gracia; David J Saranga; Hajime Sato; Stephen W Schaeffer; Michael C Schatz; Todd Schlenke; Russell Schwartz; Carmen Segarra; Rama S Singh; Laura Sirot; Marina Sirota; Nicholas B Sisneros; Chris D Smith; Temple F Smith; John Spieth; Deborah E Stage; Alexander Stark; Wolfgang Stephan; Robert L Strausberg; Sebastian Strempel; David Sturgill; Granger Sutton; Granger G Sutton; Wei Tao; Sarah Teichmann; Yoshiko N Tobari; Yoshihiko Tomimura; Jason M Tsolas; Vera L S Valente; Eli Venter; J Craig Venter; Saverio Vicario; Filipe G Vieira; Albert J Vilella; Alfredo Villasante; Brian Walenz; Jun Wang; Marvin Wasserman; Thomas Watts; Derek Wilson; Richard K Wilson; Rod A Wing; Mariana F Wolfner; Alex Wong; Gane Ka-Shu Wong; Chung-I Wu; Gabriel Wu; Daisuke Yamamoto; Hsiao-Pei Yang; Shiaw-Pyng Yang; James A Yorke; Kiyohito Yoshida; Evgeny Zdobnov; Peili Zhang; Yu Zhang; Aleksey V Zimin; Jennifer Baldwin; Amr Abdouelleil; Jamal Abdulkadir; Adal Abebe; Brikti Abera; Justin Abreu; St Christophe Acer; Lynne Aftuck; Allen Alexander; Peter An; Erica Anderson; Scott Anderson; Harindra Arachi; Marc Azer; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Aaron Berlin; Daniel Bessette; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Imane Bourzgui; Adam Brown; Patrick Cahill; Sheridon Channer; Yama Cheshatsang; Lisa Chuda; Mieke Citroen; Alville Collymore; Patrick Cooke; Maura Costello; Katie D'Aco; Riza Daza; Georgius De Haan; Stuart DeGray; Christina DeMaso; Norbu Dhargay; Kimberly Dooley; Erin Dooley; Missole Doricent; Passang Dorje; Kunsang Dorjee; Alan Dupes; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Sheila Fisher; Chelsea D Foley; Alicia Franke; Dennis Friedrich; Loryn Gadbois; Gary Gearin; Christina R Gearin; Georgia Giannoukos; Tina Goode; Joseph Graham; Edward Grandbois; Sharleen Grewal; Kunsang Gyaltsen; Nabil Hafez; Birhane Hagos; Jennifer Hall; Charlotte Henson; Andrew Hollinger; Tracey Honan; Monika D Huard; Leanne Hughes; Brian Hurhula; M Erii Husby; Asha Kamat; Ben Kanga; Seva Kashin; Dmitry Khazanovich; Peter Kisner; Krista Lance; Marcia Lara; William Lee; Niall Lennon; Frances Letendre; Rosie LeVine; Alex Lipovsky; Xiaohong Liu; Jinlei Liu; Shangtao Liu; Tashi Lokyitsang; Yeshi Lokyitsang; Rakela Lubonja; Annie Lui; Pen MacDonald; Vasilia Magnisalis; Kebede Maru; Charles Matthews; William McCusker; Susan McDonough; Teena Mehta; James Meldrim; Louis Meneus; Oana Mihai; Atanas Mihalev; Tanya Mihova; Rachel Mittelman; Valentine Mlenga; Anna Montmayeur; Leonidas Mulrain; Adam Navidi; Jerome Naylor; Tamrat Negash; Thu Nguyen; Nga Nguyen; Robert Nicol; Choe Norbu; Nyima Norbu; Nathaniel Novod; Barry O'Neill; Sahal Osman; Eva Markiewicz; Otero L Oyono; Christopher Patti; Pema Phunkhang; Fritz Pierre; Margaret Priest; Sujaa Raghuraman; Filip Rege; Rebecca Reyes; Cecil Rise; Peter Rogov; Keenan Ross; Elizabeth Ryan; Sampath Settipalli; Terry Shea; Ngawang Sherpa; Lu Shi; Diana Shih; Todd Sparrow; Jessica Spaulding; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Christopher Strader; Senait Tesfaye; Talene Thomson; Yama Thoulutsang; Dawa Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Geneva Young; Qing Yu; Lisa Zembek; Danni Zhong; Andrew Zimmer; Zac Zwirko; David B Jaffe; Pablo Alvarez; Will Brockman; Jonathan Butler; CheeWhye Chin; Sante Gnerre; Manfred Grabherr; Michael Kleber; Evan Mauceli; Iain MacCallum
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

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  7 in total

1.  Odorant receptor (Or) genes: polymorphism and divergence in the D. melanogaster and D. pseudoobscura lineages.

Authors:  Inês C Conceição; Montserrat Aguadé
Journal:  PLoS One       Date:  2010-10-13       Impact factor: 3.240

2.  Genomic sequence around butterfly wing development genes: annotation and comparative analysis.

Authors:  Inês C Conceição; Anthony D Long; Jonathan D Gruber; Patrícia Beldade
Journal:  PLoS One       Date:  2011-08-31       Impact factor: 3.240

3.  Evolutionary patterns of recently emerged animal duplogs.

Authors:  Kiyoshi Ezawa; Kazuho Ikeo; Takashi Gojobori; Naruya Saitou
Journal:  Genome Biol Evol       Date:  2011-08-22       Impact factor: 3.416

4.  Transposable element islands facilitate adaptation to novel environments in an invasive species.

Authors:  Lukas Schrader; Jay W Kim; Daniel Ence; Aleksey Zimin; Antonia Klein; Katharina Wyschetzki; Tobias Weichselgartner; Carsten Kemena; Johannes Stökl; Eva Schultner; Yannick Wurm; Christopher D Smith; Mark Yandell; Jürgen Heinze; Jürgen Gadau; Jan Oettler
Journal:  Nat Commun       Date:  2014-12-16       Impact factor: 14.919

5.  The genomic architecture and molecular evolution of ant odorant receptors.

Authors:  Sean K McKenzie; Daniel J C Kronauer
Journal:  Genome Res       Date:  2018-09-24       Impact factor: 9.043

6.  A Drosophila female pheromone elicits species-specific long-range attraction via an olfactory channel with dual specificity for sex and food.

Authors:  Sebastien Lebreton; Felipe Borrero-Echeverry; Francisco Gonzalez; Marit Solum; Erika A Wallin; Erik Hedenström; Bill S Hansson; Anna-Lena Gustavsson; Marie Bengtsson; Göran Birgersson; William B Walker; Hany K M Dweck; Paul G Becher; Peter Witzgall
Journal:  BMC Biol       Date:  2017-09-29       Impact factor: 7.431

7.  The Evolutionary Dynamics of the Odorant Receptor Gene Family in Corbiculate Bees.

Authors:  Philipp Brand; Santiago R Ramírez
Journal:  Genome Biol Evol       Date:  2017-08-01       Impact factor: 3.416

  7 in total

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