Literature DB >> 18329190

Quickly evolving histones, nucleosome stability and chromatin folding: all about histone H2A.Bbd.

Rodrigo González-Romero1, Josefina Méndez, Juan Ausió, José M Eirín-López.   

Abstract

Histone H2A.Bbd (Barr body-deficient) is a novel histone variant which is largely excluded from the inactive X chromosome of mammals. Discovered only 6 years ago, H2A.Bbd displays very unusual structural and functional properties, for instance, it is relatively shorter and only 48% identical compared to H2A, lacking both the typical C-terminal tail of the H2A family and the very last sequence of the docking domain, making it the most specialized among all histone variants known to date. Indeed, molecular evolutionary analyses have shown that H2A.Bbd is a highly hypervariable and quickly evolving protein exclusive to mammalian lineages, in striking contrast to all other histones. Different studies have described a deposition pattern of H2A.Bbd in the chromatin that overlaps with regions of histone H4 acetylation suggesting its association with transcriptionally active euchromatic regions of the genome. In this regard, it is believed that this histone variant plays an important role in determining such regions by destabilizing the nucleosome and locally unfolding the chromatin fiber. This review provides a concise, comprehensive and timely summary of the work published on H2A.Bbd structure and function. Special emphasis is placed on its chromatin deposition patterns in relation to gene expression profiles and its evolutionary history, as well as on the dynamics of H2A.Bbd-containing nucleosomes.

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Year:  2008        PMID: 18329190     DOI: 10.1016/j.gene.2008.02.003

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  26 in total

Review 1.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

2.  The dynamics of individual nucleosomes controls the chromatin condensation pathway: direct atomic force microscopy visualization of variant chromatin.

Authors:  Fabien Montel; Hervé Menoni; Martin Castelnovo; Jan Bednar; Stefan Dimitrov; Dimitar Angelov; Cendrine Faivre-Moskalenko
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

Review 3.  Histone variants--ancient wrap artists of the epigenome.

Authors:  Paul B Talbert; Steven Henikoff
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03-03       Impact factor: 94.444

4.  The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation.

Authors:  Xiaoyuan Song; Josephine Bowen; Wei Miao; Yifan Liu; Martin A Gorovsky
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

5.  Distinct features of the histone core structure in nucleosomes containing the histone H2A.B variant.

Authors:  Masaaki Sugiyama; Yasuhiro Arimura; Kazuyoshi Shirayama; Risa Fujita; Yojiro Oba; Nobuhiro Sato; Rintaro Inoue; Takashi Oda; Mamoru Sato; Richard K Heenan; Hitoshi Kurumizaka
Journal:  Biophys J       Date:  2014-05-20       Impact factor: 4.033

Review 6.  Histone H2A isoforms: Potential implications in epigenome plasticity and diseases in eukaryotes.

Authors:  Sanket Shah; Tripti Verma; Mudasir Rashid; Nikhil Gadewal; Sanjay Gupta
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

Review 7.  Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers.

Authors:  Alexey K Shaytan; David Landsman; Anna R Panchenko
Journal:  Curr Opin Struct Biol       Date:  2015-02-27       Impact factor: 6.809

Review 8.  Role of chromatin states in transcriptional memory.

Authors:  Sharmistha Kundu; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2009-02-21

9.  The evolutionary differentiation of two histone H2A.Z variants in chordates (H2A.Z-1 and H2A.Z-2) is mediated by a stepwise mutation process that affects three amino acid residues.

Authors:  José M Eirín-López; Rodrigo González-Romero; Deanna Dryhurst; Toyotaka Ishibashi; Juan Ausió
Journal:  BMC Evol Biol       Date:  2009-02-04       Impact factor: 3.260

10.  The incorporation of the novel histone variant H2AL2 confers unusual structural and functional properties of the nucleosome.

Authors:  Sajad Hussain Syed; Mathieu Boulard; Manu Shubhdarshan Shukla; Thierry Gautier; Andrew Travers; Jan Bednar; Cendrine Faivre-Moskalenko; Stefan Dimitrov; Dimitar Angelov
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

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