Literature DB >> 18326641

Global and local structural changes of cytochrome c and lysozyme characterized by a multigroup unfolding process.

Ying-Jen Shiu1, U-Ser Jeng, Yu-Shan Huang, Ying-Huang Lai, Hsiu-Feng Lu, Chia-Tsen Liang, I-Jui Hsu, Chiu-Hun Su, Charlene Su, Ito Chao, An-Chung Su, Sheng-Hsien Lin.   

Abstract

Equilibrium unfolding behaviors of cytochrome c and lysozyme induced by the presence of urea (0-10 M) as well as changes in temperature (295-363 K) or pH (1.8-7) are examined via small-angle x-ray scattering and spectroscopic techniques, including circular dichroism and optical absorption. Denaturant and temperature effects are incorporated into the free energy expression for a general multigroup unfolding process. Results indicate that there are at least four unfolding groups in the temperature-, urea-, or pH-induced unfolding of cytochrome c: two of these are related to the prosthetic heme group, and the other two correspond, respectively, to the unfolding of alpha-helices and global changes in protein morphology that are largely unaccounted for by the first two groups. In contrast, the unfolding of lysozyme approximately follows a simple one-group process. A modified mean-field Ising model is adopted for a coherent description of the unfolding behaviors observed. Thermodynamic parameters extracted from simple denaturing processes, on the basis of the Ising model, can closely predict unfolding behaviors of the proteins in compounded denaturing environments.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18326641      PMCID: PMC2397345          DOI: 10.1529/biophysj.107.124214

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  29 in total

Review 1.  The structural basis of protein folding and its links with human disease.

Authors:  C M Dobson
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-02-28       Impact factor: 6.237

2.  Determination of domain structure of proteins from X-ray solution scattering.

Authors:  D I Svergun; M V Petoukhov; M H Koch
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

3.  Competitive model on denaturant-mediated protein unfolding.

Authors:  R Murugan
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Protein folding: the stepwise assembly of foldon units.

Authors:  Haripada Maity; Mita Maity; Mallela M G Krishna; Leland Mayne; S Walter Englander
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-17       Impact factor: 11.205

5.  Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data.

Authors:  Alexander Grishaev; Justin Wu; Jill Trewhella; Ad Bax
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

6.  Effect of polyglutamate on the thermal stability of ferricytochrome c.

Authors:  J Bágel'ová; M Antalík; Z Tomori
Journal:  Biochem Mol Biol Int       Date:  1997-11

7.  Impact of local and non-local interactions on thermodynamics and kinetics of protein folding.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  J Mol Biol       Date:  1995-09-29       Impact factor: 5.469

8.  Protein folding intermediates: native-state hydrogen exchange.

Authors:  Y Bai; T R Sosnick; L Mayne; S W Englander
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

9.  Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

Authors:  Shuji Akiyama; Satoshi Takahashi; Tetsunari Kimura; Koichiro Ishimori; Isao Morishima; Yukihiro Nishikawa; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

10.  How cytochrome c folds, and why: submolecular foldon units and their stepwise sequential stabilization.

Authors:  Haripada Maity; Mita Maity; S Walter Englander
Journal:  J Mol Biol       Date:  2004-10-08       Impact factor: 5.469

View more
  7 in total

1.  Single-molecule lysozyme dynamics monitored by an electronic circuit.

Authors:  Yongki Choi; Issa S Moody; Patrick C Sims; Steven R Hunt; Brad L Corso; Israel Perez; Gregory A Weiss; Philip G Collins
Journal:  Science       Date:  2012-01-20       Impact factor: 47.728

2.  Thermodynamics of protein folding using a modified Wako-Saitô-Muñoz-Eaton model.

Authors:  Min-Yeh Tsai; Jian-Min Yuan; Yoshiaki Teranishi; Sheng Hsien Lin
Journal:  J Biol Phys       Date:  2012-06-21       Impact factor: 1.365

3.  Protein-Glass Surface Interactions and Ion Desalting in Electrospray Ionization with Submicron Emitters.

Authors:  Zije Xia; Evan R Williams
Journal:  J Am Soc Mass Spectrom       Date:  2017-10-12       Impact factor: 3.109

4.  Model-independent decomposition of two-state data.

Authors:  Eric C Landahl; Sarah E Rice
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-12-16

5.  Quenching of TryptophanFluorescence in Unfolded Cytochrome c: A Biophysics Experiment for Physical Chemistry Students.

Authors:  Diana E Schlamadinger; Dina I Kats; Judy E Kim
Journal:  J Chem Educ       Date:  2010-09-01       Impact factor: 2.979

6.  Resonant x-ray scattering and absorption for the global and local structures of Cu-modified metallothioneins in solution.

Authors:  Meiyi Li; Yu-Shan Huang; U-Ser Jeng; I-Jui Hsu; Yewchung Sermon Wu; Ying-Huang Lai; Chiu-Hun Su; Jyh-Fu Lee; Yu Wang; Chia-Ching Chang
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

7.  Activation of Cytochrome C Peroxidase Function Through Coordinated Foldon Loop Dynamics upon Interaction with Anionic Lipids.

Authors:  Mingyue Li; Wanyang Sun; Vladimir A Tyurin; Maria DeLucia; Jinwoo Ahn; Valerian E Kagan; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2021-05-24       Impact factor: 6.151

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.