Literature DB >> 15774579

Protein folding: the stepwise assembly of foldon units.

Haripada Maity1, Mita Maity, Mallela M G Krishna, Leland Mayne, S Walter Englander.   

Abstract

Equilibrium and kinetic hydrogen exchange experiments show that cytochrome c is composed of five foldon units that continually unfold and refold even under native conditions. Folding proceeds by the stepwise assembly of the foldon units rather than one amino acid at a time. The folding pathway is determined by a sequential stabilization process; previously formed foldons guide and stabilize subsequent foldons to progressively build the native protein. Four other proteins have been found to show similar behavior. These results support stepwise protein folding pathways through discrete intermediates.

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Year:  2005        PMID: 15774579      PMCID: PMC555724          DOI: 10.1073/pnas.0501043102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Kinetics of conformational fluctuations by EX1 hydrogen exchange in native proteins.

Authors:  T Sivaraman; A D Robertson
Journal:  Methods Mol Biol       Date:  2001

2.  Intimate view of a kinetic protein folding intermediate: residue-resolved structure, interactions, stability, folding and unfolding rates, homogeneity.

Authors:  Mallela M G Krishna; Yan Lin; Leland Mayne; S Walter Englander
Journal:  J Mol Biol       Date:  2003-11-28       Impact factor: 5.469

3.  Folding units govern the cytochrome c alkaline transition.

Authors:  Linh Hoang; Haripada Maity; Mallela M G Krishna; Yan Lin; S Walter Englander
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

4.  Contact order, transition state placement and the refolding rates of single domain proteins.

Authors:  K W Plaxco; K T Simons; D Baker
Journal:  J Mol Biol       Date:  1998-04-10       Impact factor: 5.469

5.  Protein folding intermediates: native-state hydrogen exchange.

Authors:  Y Bai; T R Sosnick; L Mayne; S W Englander
Journal:  Science       Date:  1995-07-14       Impact factor: 47.728

6.  Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding.

Authors:  J K Myers; C N Pace; J M Scholtz
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

7.  Detection of rare partially folded molecules in equilibrium with the native conformation of RNaseH.

Authors:  A K Chamberlain; T M Handel; S Marqusee
Journal:  Nat Struct Biol       Date:  1996-09

8.  Molecular collapse: the rate-limiting step in two-state cytochrome c folding.

Authors:  T R Sosnick; L Mayne; S W Englander
Journal:  Proteins       Date:  1996-04

9.  How cytochrome c folds, and why: submolecular foldon units and their stepwise sequential stabilization.

Authors:  Haripada Maity; Mita Maity; S Walter Englander
Journal:  J Mol Biol       Date:  2004-10-08       Impact factor: 5.469

Review 10.  Hydrogen exchange methods to study protein folding.

Authors:  Mallela M G Krishna; Linh Hoang; Yan Lin; S Walter Englander
Journal:  Methods       Date:  2004-09       Impact factor: 3.608

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  113 in total

1.  Modeling large regions in proteins: applications to loops, termini, and folding.

Authors:  Aashish N Adhikari; Jian Peng; Michael Wilde; Jinbo Xu; Karl F Freed; Tobin R Sosnick
Journal:  Protein Sci       Date:  2011-12-05       Impact factor: 6.725

2.  Reducing the dimensionality of the protein-folding search problem.

Authors:  George D Chellapa; George D Rose
Journal:  Protein Sci       Date:  2012-07-06       Impact factor: 6.725

3.  Achieving secondary structural resolution in kinetic measurements of protein folding: a case study of the folding mechanism of Trp-cage.

Authors:  Robert M Culik; Arnaldo L Serrano; Michelle R Bunagan; Feng Gai
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-29       Impact factor: 15.336

4.  Sequence, structure, and cooperativity in folding of elementary protein structural motifs.

Authors:  Jason K Lai; Ginka S Kubelka; Jan Kubelka
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

5.  A protein folding pathway with multiple folding intermediates at atomic resolution.

Authors:  Hanqiao Feng; Zheng Zhou; Yawen Bai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

6.  A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments.

Authors:  Patrick Weinkam; Chenghang Zong; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-22       Impact factor: 11.205

7.  Partially unfolded forms and non-two-state folding of a beta-sandwich: FHA domain from Arabidopsis receptor kinase-associated protein phosphatase.

Authors:  Xiangyang Liang; Gui-in Lee; Steven R Van Doren
Journal:  J Mol Biol       Date:  2006-09-03       Impact factor: 5.469

8.  Molecular statistics of cytochrome c: structural plasticity and molecular environment.

Authors:  Giovanni La Penna; Sara Furlan; Lucia Banci
Journal:  J Biol Inorg Chem       Date:  2006-10-12       Impact factor: 3.358

Review 9.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

10.  Proline substitution of dimer interface β-strand residues as a strategy for the design of functional monomeric proteins.

Authors:  Prem Raj B Joseph; Krishna Mohan Poluri; Pavani Gangavarapu; Lavanya Rajagopalan; Sandeep Raghuwanshi; Ricardo M Richardson; Roberto P Garofalo; Krishna Rajarathnam
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

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