Literature DB >> 18325625

Adapting to environmental changes using specialized paralogs.

Gabino Sanchez-Perez1, Alex Mira, Gábor Nyiro, Lejla Pasić, Francisco Rodriguez-Valera.   

Abstract

When a bacterial species survives under changing environmental circumstances (e.g. salinity or temperature), its proteins might not function in all physicochemical conditions. We propose that prokaryotes cope with this problem by having two or more copies of the genes affected by environmental fluctuations, each one performing the same function under different conditions (i.e. ecoparalog). We identify potential examples in the bacterium Salinibacter ruber and in other species that experience wide environmental variations.

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Year:  2008        PMID: 18325625     DOI: 10.1016/j.tig.2008.01.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  31 in total

Review 1.  Anaerobic catabolism of aromatic compounds: a genetic and genomic view.

Authors:  Manuel Carmona; María Teresa Zamarro; Blas Blázquez; Gonzalo Durante-Rodríguez; Javier F Juárez; J Andrés Valderrama; María J L Barragán; José Luis García; Eduardo Díaz
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

2.  Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances.

Authors:  Ching-Hung Tseng; Pei-Wen Chiang; Fuh-Kwo Shiah; Yi-Lung Chen; Jia-Rong Liou; Ting-Chang Hsu; Suhinthan Maheswararajah; Isaam Saeed; Saman Halgamuge; Sen-Lin Tang
Journal:  ISME J       Date:  2013-07-11       Impact factor: 10.302

Review 3.  Adaptation of cells to new environments.

Authors:  Aaron N Brooks; Serdar Turkarslan; Karlyn D Beer; Fang Yin Lo; Nitin S Baliga
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-31

4.  Differential regulation of six heavy metal efflux systems in the response of Myxococcus xanthus to copper.

Authors:  Aurelio Moraleda-Muñoz; Juana Pérez; Antonio Luis Extremera; José Muñoz-Dorado
Journal:  Appl Environ Microbiol       Date:  2010-06-18       Impact factor: 4.792

5.  Comparative analysis of genome-wide Mlo gene family in Cajanus cajan and Phaseolus vulgaris.

Authors:  Reena Deshmukh; V K Singh; B D Singh
Journal:  Genetica       Date:  2016-03-10       Impact factor: 1.082

6.  Gene duplications in prokaryotes can be associated with environmental adaptation.

Authors:  Marit S Bratlie; Jostein Johansen; Brad T Sherman; Da Wei Huang; Richard A Lempicki; Finn Drabløs
Journal:  BMC Genomics       Date:  2010-10-20       Impact factor: 3.969

7.  Comprehensive Molecular Characterization of Bacterial Communities in Feces of Pet Birds Using 16S Marker Sequencing.

Authors:  Jose F Garcia-Mazcorro; Stephany A Castillo-Carranza; Blake Guard; Jose P Gomez-Vazquez; Scot E Dowd; Donald J Brigthsmith
Journal:  Microb Ecol       Date:  2016-08-27       Impact factor: 4.552

8.  Metagenome analysis of an extreme microbial symbiosis reveals eurythermal adaptation and metabolic flexibility.

Authors:  Joseph J Grzymski; Alison E Murray; Barbara J Campbell; Mihailo Kaplarevic; Guang R Gao; Charles Lee; Roy Daniel; Amir Ghadiri; Robert A Feldman; Stephen C Cary
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

9.  An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences.

Authors:  Joshua E Turse; Matthew J Marshall; James K Fredrickson; Mary S Lipton; Stephen J Callister
Journal:  PLoS One       Date:  2010-11-12       Impact factor: 3.240

10.  Haloarcula marismortui archaellin genes as ecoparalogs.

Authors:  Alexey S Syutkin; Mikhail G Pyatibratov; Oxana V Galzitskaya; Francisco Rodríguez-Valera; Oleg V Fedorov
Journal:  Extremophiles       Date:  2013-12-25       Impact factor: 2.395

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