Literature DB >> 21197660

Adaptation of cells to new environments.

Aaron N Brooks1, Serdar Turkarslan, Karlyn D Beer, Fang Yin Lo, Nitin S Baliga.   

Abstract

The evolutionary success of an organism is a testament to its inherent capacity to keep pace with environmental conditions that change over short and long periods. Mechanisms underlying adaptive processes are being investigated with renewed interest and excitement. This revival is partly fueled by powerful technologies that can probe molecular phenomena at a systems scale. Such studies provide spectacular insight into the mechanisms of adaptation, including rewiring of regulatory networks via natural selection of horizontal gene transfers, gene duplication, deletion, readjustment of kinetic parameters, and myriad other genetic reorganizational events. Here, we discuss advances in prokaryotic systems biology from the perspective of evolutionary principles that have shaped regulatory networks for dynamic adaptation to environmental change.
Copyright © 2010 John Wiley & Sons, Inc.

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Year:  2010        PMID: 21197660      PMCID: PMC3081528          DOI: 10.1002/wsbm.136

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  133 in total

1.  KEGG: kyoto encyclopedia of genes and genomes.

Authors:  M Kanehisa; S Goto
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  From molecular to modular cell biology.

Authors:  L H Hartwell; J J Hopfield; S Leibler; A W Murray
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

Review 3.  Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process.

Authors:  C R Woese; G J Olsen; M Ibba; D Söll
Journal:  Microbiol Mol Biol Rev       Date:  2000-03       Impact factor: 11.056

4.  Is gene expression in Halobacterium NRC-1 regulated by multiple TBP and TFB transcription factors?

Authors:  N S Baliga; Y A Goo; W V Ng; L Hood; C J Daniels; S DasSarma
Journal:  Mol Microbiol       Date:  2000-06       Impact factor: 3.501

5.  Evolution of microbial diversity during prolonged starvation.

Authors:  S E Finkel; R Kolter
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

6.  Genomic evolution during a 10,000-generation experiment with bacteria.

Authors:  D Papadopoulos; D Schneider; J Meier-Eiss; W Arber; R E Lenski; M Blot
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

Review 7.  From genotype to phenotype: buffering mechanisms and the storage of genetic information.

Authors:  S L Rutherford
Journal:  Bioessays       Date:  2000-12       Impact factor: 4.345

8.  The COG database: a tool for genome-scale analysis of protein functions and evolution.

Authors:  R L Tatusov; M Y Galperin; D A Natale; E V Koonin
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

9.  Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Authors:  K E Nelson; R A Clayton; S R Gill; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; W C Nelson; K A Ketchum; L McDonald; T R Utterback; J A Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; J Heidelberg; G G Sutton; R D Fleischmann; J A Eisen; O White; S L Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

10.  Systematic changes in gene expression patterns following adaptive evolution in yeast.

Authors:  T L Ferea; D Botstein; P O Brown; R F Rosenzweig
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

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  48 in total

1.  Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Authors:  Liang Qin; Fredj Ben Bdira; Yann G J Sterckx; Alexander N Volkov; Jocelyne Vreede; Gabriele Giachin; Peter van Schaik; Marcellus Ubbink; Remus T Dame
Journal:  Nucleic Acids Res       Date:  2020-02-28       Impact factor: 16.971

2.  3-Hydroxybutyrate Derived from Poly-3-Hydroxybutyrate Mobilization Alleviates Protein Aggregation in Heat-Stressed Herbaspirillum seropedicae SmR1.

Authors:  Luis Paulo Silveira Alves; Arquimedes Paixão Santana-Filho; Guilherme Lanzi Sassaki; Fabio de Oliveira Pedrosa; Emanuel Maltempi de Souza; Leda Satie Chubatsu; Marcelo Müller-Santos
Journal:  Appl Environ Microbiol       Date:  2020-08-18       Impact factor: 4.792

3.  Stress signalling in acellular slime moulds and its detection by conspecifics.

Authors:  L Briard; C Goujarde; C Bousquet; A Dussutour
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-05-18       Impact factor: 6.237

Review 4.  Modulation of quorum sensing-associated virulence in bacteria: carbohydrate as a key factor.

Authors:  Sarika Suresh; Prathiksha Prabhakara Alva; Ramya Premanath
Journal:  Arch Microbiol       Date:  2021-02-28       Impact factor: 2.552

5.  Plants are intelligent, here's how.

Authors:  Paco Calvo; Monica Gagliano; Gustavo M Souza; Anthony Trewavas
Journal:  Ann Bot       Date:  2020-01-08       Impact factor: 4.357

6.  Can Pathogenic and Nonpathogenic Bacteria Be Distinguished by Sensory Protein Abundance?

Authors:  Subhrajit Bhar; Tungadri Bose; Sharmila S Mande
Journal:  Appl Environ Microbiol       Date:  2020-07-02       Impact factor: 4.792

7.  Molecular control of gene expression by Brucella BaaR, an IclR-type transcriptional repressor.

Authors:  Julien Herrou; Daniel M Czyż; Aretha Fiebig; Jonathan W Willett; Youngchang Kim; Ruiying Wu; Gyorgy Babnigg; Sean Crosson
Journal:  J Biol Chem       Date:  2018-03-22       Impact factor: 5.157

8.  Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Authors:  Luisa Orsini; James B Brown; Omid Shams Solari; Dong Li; Shan He; Ram Podicheti; Marcus H Stoiber; Katina I Spanier; Donald Gilbert; Mieke Jansen; Douglas B Rusch; Michael E Pfrender; John K Colbourne; Mikko J Frilander; Jouni Kvist; Ellen Decaestecker; Karel A C De Schamphelaere; Luc De Meester
Journal:  Mol Ecol       Date:  2017-08-19       Impact factor: 6.185

Review 9.  Reasons for 2-furaldehyde and 5-hydroxymethyl-2-furaldehyde resistance in Saccharomyces cerevisiae: current state of knowledge and perspectives for further improvements.

Authors:  Z Lewis Liu
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-08       Impact factor: 4.813

10.  Electromechanics and Volume Dynamics in Nonexcitable Tissue Cells.

Authors:  Florence Yellin; Yizeng Li; Varun K A Sreenivasan; Brenda Farrell; Manu B Johny; David Yue; Sean X Sun
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

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