Literature DB >> 18291542

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Sandro Vivona1, Jennifer L Gardy, Srinivasan Ramachandran, Fiona S L Brinkman, G P S Raghava, Darren R Flower, Francesco Filippini.   

Abstract

Genome sequences from many organisms, including humans, have been completed, and high-throughput analyses have produced burgeoning volumes of 'omics' data. Bioinformatics is crucial for the management and analysis of such data and is increasingly used to accelerate progress in a wide variety of large-scale and object-specific functional analyses. Refined algorithms enable biotechnologists to follow 'computer-aided strategies' based on experiments driven by high-confidence predictions. In order to address compound problems, current efforts in immuno-informatics and reverse vaccinology are aimed at developing and tuning integrative approaches and user-friendly, automated bioinformatics environments. This will herald a move to 'computer-aided biotechnology': smart projects in which time-consuming and expensive large-scale experimental approaches are progressively replaced by prediction-driven investigations.

Entities:  

Mesh:

Year:  2008        PMID: 18291542     DOI: 10.1016/j.tibtech.2007.12.006

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  38 in total

Review 1.  Immunoinformatics: an integrated scenario.

Authors:  Namrata Tomar; Rajat K De
Journal:  Immunology       Date:  2010-08-16       Impact factor: 7.397

Review 2.  Major histocompatibility complex class I binding predictions as a tool in epitope discovery.

Authors:  Claus Lundegaard; Ole Lund; Søren Buus; Morten Nielsen
Journal:  Immunology       Date:  2010-05-26       Impact factor: 7.397

3.  Commentaries on "Informatics and medicine: from molecules to populations".

Authors:  R B Altman; R Balling; J F Brinkley; E Coiera; F Consorti; M A Dhansay; A Geissbuhler; W Hersh; S Y Kwankam; N M Lorenzi; F Martin-Sanchez; G I Mihalas; Y Shahar; K Takabayashi; G Wiederhold
Journal:  Methods Inf Med       Date:  2008       Impact factor: 2.176

4.  Computational tools for modern vaccine development.

Authors:  Andaleeb Sajid; Yogendra Singh; Pratyoosh Shukla
Journal:  Hum Vaccin Immunother       Date:  2019-12-18       Impact factor: 3.452

5.  The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions.

Authors:  Sinead C Leahy; William J Kelly; Eric Altermann; Ron S Ronimus; Carl J Yeoman; Diana M Pacheco; Dong Li; Zhanhao Kong; Sharla McTavish; Carrie Sang; Suzanne C Lambie; Peter H Janssen; Debjit Dey; Graeme T Attwood
Journal:  PLoS One       Date:  2010-01-28       Impact factor: 3.240

6.  Computer aided selection of candidate vaccine antigens.

Authors:  Darren R Flower; Isabel K Macdonald; Kamna Ramakrishnan; Matthew N Davies; Irini A Doytchinova
Journal:  Immunome Res       Date:  2010-11-03

7.  Theoretical analysis of the neuraminidase epitope of the Mexican A H1N1 influenza strain, and experimental studies on its interaction with rabbit and human hosts.

Authors:  Paola Kinara Reyes Loyola; R Campos-Rodríguez; Martiniano Bello; S Rojas-Hernández; Mirko Zimic; Miguel Quiliano; Verónica Briz; M Angeles Muñoz-Fernández; Luis Tolentino-López; Jose Correa-Basurto
Journal:  Immunol Res       Date:  2013-05       Impact factor: 2.829

8.  Integrative immunoinformatics for Mycobacterial diseases in R platform.

Authors:  Rupanjali Chaudhuri; Deepika Kulshreshtha; Muthukurussi Varieth Raghunandanan; Srinivasan Ramachandran
Journal:  Syst Synth Biol       Date:  2014-02-15

9.  Genomic analysis of Campylobacter fetus subspecies: identification of candidate virulence determinants and diagnostic assay targets.

Authors:  Paula M Moolhuijzen; Ala E Lew-Tabor; Bartosz M Wlodek; Fernán G Agüero; Diego J Comerci; Rodolfo A Ugalde; Daniel O Sanchez; Rudi Appels; Matthew Bellgard
Journal:  BMC Microbiol       Date:  2009-05-08       Impact factor: 3.605

10.  Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach.

Authors:  Manuel J Rodríguez-Ortega; Inmaculada Luque; Carmen Tarradas; José A Bárcena
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969

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