Literature DB >> 31545127

Computational tools for modern vaccine development.

Andaleeb Sajid1, Yogendra Singh2, Pratyoosh Shukla3.   

Abstract

Vaccines play an essential role in controlling the rates of fatality and morbidity. Vaccines not only arrest the beginning of different diseases but also assign a gateway for its elimination and reduce toxicity. This review gives an overview of the possible uses of computational tools for vaccine design. Moreover, we have described the initiatives of utilizing the diverse computational resources by exploring the immunological databases for developing epitope-based vaccines, peptide-based drugs, and other resources of immunotherapeutics. Finally, the applications of multi-graft and multivalent scaffolding, codon optimization and antibodyomics tools in identifying and designing in silico vaccine candidates are described.

Entities:  

Keywords:  Vaccine; antibodyomics tools; epitope prediction; multi-graft scaffolding; rational design; reverse vaccinology

Year:  2019        PMID: 31545127      PMCID: PMC7227725          DOI: 10.1080/21645515.2019.1670035

Source DB:  PubMed          Journal:  Hum Vaccin Immunother        ISSN: 2164-5515            Impact factor:   3.452


  133 in total

1.  Computational designing of a poly-epitope fecundity vaccine for multiple species of livestock.

Authors:  Bhaskar Ganguly; Sunil Kumar Rastogi; Shiv Prasad
Journal:  Vaccine       Date:  2013-11-06       Impact factor: 3.641

Review 2.  An overview of bioinformatics tools for epitope prediction: implications on vaccine development.

Authors:  Ruth E Soria-Guerra; Ricardo Nieto-Gomez; Dania O Govea-Alonso; Sergio Rosales-Mendoza
Journal:  J Biomed Inform       Date:  2014-11-10       Impact factor: 6.317

Review 3.  Applications of Immunomodulatory Immune Synergies to Adjuvant Discovery and Vaccine Development.

Authors:  Janine K Tom; Tyler J Albin; Saikat Manna; Brittany A Moser; Rachel C Steinhardt; Aaron P Esser-Kahn
Journal:  Trends Biotechnol       Date:  2018-11-21       Impact factor: 19.536

Review 4.  Evolution of rational vaccine designs for genital herpes immunotherapy.

Authors:  Johanna Katharina Kaufmann; Jessica Baker Flechtner
Journal:  Curr Opin Virol       Date:  2016-02-18       Impact factor: 7.090

Review 5.  Deep learning of genomic variation and regulatory network data.

Authors:  Amalio Telenti; Christoph Lippert; Pi-Chuan Chang; Mark DePristo
Journal:  Hum Mol Genet       Date:  2018-05-01       Impact factor: 6.150

Review 6.  Virus-like particles as antigenic nanomaterials for inducing protective immune responses in the lung.

Authors:  Agnieszka Rynda-Apple; Dustin P Patterson; Trevor Douglas
Journal:  Nanomedicine (Lond)       Date:  2014       Impact factor: 5.307

7.  DyNAVacS: an integrative tool for optimized DNA vaccine design.

Authors:  Nagarajan Harish; Rekha Gupta; Parul Agarwal; Vinod Scaria; Beena Pillai
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  Vaccine adjuvant informatics: from data integration and analysis to rational vaccine adjuvant design.

Authors:  Yongqun He
Journal:  Front Immunol       Date:  2014-02-03       Impact factor: 7.561

Review 9.  Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.

Authors:  Peter D Kwong; Gwo-Yu Chuang; Brandon J DeKosky; Tatyana Gindin; Ivelin S Georgiev; Thomas Lemmin; Chaim A Schramm; Zizhang Sheng; Cinque Soto; An-Suei Yang; John R Mascola; Lawrence Shapiro
Journal:  Immunol Rev       Date:  2017-01       Impact factor: 12.988

10.  Future Challenges for Vaccinologists.

Authors:  Sunil Thomas; Rima Dilbarova; Rino Rappuoli
Journal:  Methods Mol Biol       Date:  2016
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  8 in total

Review 1.  Toward rational vaccine engineering.

Authors:  Yashavantha L Vishweshwaraiah; Nikolay V Dokholyan
Journal:  Adv Drug Deliv Rev       Date:  2022-02-09       Impact factor: 15.470

Review 2.  The progress of peptide vaccine clinical trials in gynecologic oncology.

Authors:  Mi Tang; Jiang-Hui Cai; Hao-Yang Diao; Wen-Mei Guo; Xiao Yang; ShaSha Xing
Journal:  Hum Vaccin Immunother       Date:  2022-06-10       Impact factor: 4.526

3.  Recent Advances in Vaccine Technology and Design.

Authors:  Rossella Cianci; Laura Franza
Journal:  Vaccines (Basel)       Date:  2022-04-15

Review 4.  Peptide-Based Vaccination Therapy for Rheumatic Diseases.

Authors:  Bin Wang; Shiju Chen; Qing Zheng; Yuan Liu; Guixiu Shi
Journal:  J Immunol Res       Date:  2020-03-18       Impact factor: 4.818

Review 5.  Development of synthetic antigen vaccines for COVID-19.

Authors:  Maria da Conceição Viana Invenção; Alanne Rayssa da Silva Melo; Larissa Silva de Macêdo; Thaís Souto Paula da Costa Neves; Cristiane Moutinho Lagos de Melo; Marcelo Nazário Cordeiro; Marcus Vinicius de Aragão Batista; Antonio Carlos de Freitas
Journal:  Hum Vaccin Immunother       Date:  2021-10-06       Impact factor: 3.452

6.  Structural and Functional Annotation and Molecular Docking Analysis of a Hypothetical Protein from Neisseria gonorrhoeae: An In-Silico Approach.

Authors:  Lincon Mazumder; Md Rakibul Hasan; Kanij Fatema; Md Zahirul Islam; Sanjida Khanam Tamanna
Journal:  Biomed Res Int       Date:  2022-09-05       Impact factor: 3.246

Review 7.  Systems Biology Approaches for Therapeutics Development Against COVID-19.

Authors:  Shweta Jaiswal; Mohit Kumar; Yogendra Singh; Pratyoosh Shukla
Journal:  Front Cell Infect Microbiol       Date:  2020-10-28       Impact factor: 5.293

8.  An immunoinformatics study on the spike protein of SARS-CoV-2 revealing potential epitopes as vaccine candidates.

Authors:  Arafat Islam Ashik; Mahedi Hasan; Atiya Tahira Tasnim; Md Belal Chowdhury; Tanvir Hossain; Shamim Ahmed
Journal:  Heliyon       Date:  2020-09-04
  8 in total

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