Literature DB >> 18286615

Optimization of volumetric computed tomography for skeletal analysis of model genetic organisms.

Sergio X Vasquez1, Mark S Hansen, Ali N Bahadur, Matthew F Hockin, Gordon L Kindlmann, Lisa Nevell, Isabel Q Wu, David J Grunwald, David M Weinstein, Greg M Jones, Christopher R Johnson, John L Vandeberg, Mario R Capecchi, Charles Keller.   

Abstract

Forward and reverse genetics now allow researchers to understand embryonic and postnatal gene function in a broad range of species. Although some genetic mutations cause obvious morphological change, other mutations can be more subtle and, without adequate observation and quantification, might be overlooked. For the increasing number of genetic model organisms examined by the growing field of phenomics, standardized but sensitive methods for quantitative analysis need to be incorporated into routine practice to effectively acquire and analyze ever-increasing quantities of phenotypic data. In this study, we present platform-independent parameters for the use of microscopic x-ray computed tomography (microCT) for phenotyping species-specific skeletal morphology of a variety of different genetic model organisms. We show that microCT is suitable for phenotypic characterization for prenatal and postnatal specimens across multiple species.

Mesh:

Year:  2008        PMID: 18286615      PMCID: PMC3189451          DOI: 10.1002/ar.20670

Source DB:  PubMed          Journal:  Anat Rec (Hoboken)        ISSN: 1932-8486            Impact factor:   2.064


  64 in total

1.  Primary sensory afferent innervation of the developing superficial dorsal horn in the South American opossum Monodelphis domestica.

Authors:  Peter D Kitchener; Elspeth J Hutton; Graham W Knott
Journal:  J Comp Neurol       Date:  2006-03-01       Impact factor: 3.215

2.  Anatomical phenotyping in the brain and skull of a mutant mouse by magnetic resonance imaging and computed tomography.

Authors:  Brian J Nieman; Ann M Flenniken; S Lee Adamson; R Mark Henkelman; John G Sled
Journal:  Physiol Genomics       Date:  2006-01-12       Impact factor: 3.107

3.  Practical vessel imaging by computed tomography in live transgenic mouse models for human tumors.

Authors:  Gordon L Kindlmann; David M Weinstein; Greg M Jones; Christopher R Johnson; Mario R Capecchi; Charles Keller
Journal:  Mol Imaging       Date:  2005 Oct-Dec       Impact factor: 4.488

4.  The craniofacial phenotype of the Crouzon mouse: analysis of a model for syndromic craniosynostosis using three-dimensional MicroCT.

Authors:  Chad A Perlyn; Valerie B DeLeon; Christian Babbs; Daniel Govier; Lance Burell; Tron Darvann; Sven Kreiborg; Gillian Morriss-Kay
Journal:  Cleft Palate Craniofac J       Date:  2006-11

5.  Effects of strontium on bone strength, density, volume, and microarchitecture in laying hens.

Authors:  Mohammad Shahnazari; Neil A Sharkey; Gary J Fosmire; Roland M Leach
Journal:  J Bone Miner Res       Date:  2006-11       Impact factor: 6.741

6.  Absence of ras gene mutations in UV-induced malignant melanomas correlates with a dermal origin of melanocytes in Monodelphis domestica.

Authors:  Jeannie Chan; Edward S Robinson; I-Tien Yeh; John R McCarrey
Journal:  Cancer Lett       Date:  2002-10-08       Impact factor: 8.679

7.  Pathobiology of Asian highly pathogenic avian influenza H5N1 virus infections in ducks.

Authors:  Mary J Pantin-Jackwood; David E Swayne
Journal:  Avian Dis       Date:  2007-03       Impact factor: 1.577

8.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

9.  Perturbations in bone formation and resorption in insulin-like growth factor binding protein-3 transgenic mice.

Authors:  Josef V Silha; Suresh Mishra; Clifford J Rosen; Wesley G Beamer; Russell T Turner; David R Powell; Liam J Murphy
Journal:  J Bone Miner Res       Date:  2003-10       Impact factor: 6.741

10.  Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.

Authors:  Tarjei S Mikkelsen; Matthew J Wakefield; Bronwen Aken; Chris T Amemiya; Jean L Chang; Shannon Duke; Manuel Garber; Andrew J Gentles; Leo Goodstadt; Andreas Heger; Jerzy Jurka; Michael Kamal; Evan Mauceli; Stephen M J Searle; Ted Sharpe; Michelle L Baker; Mark A Batzer; Panayiotis V Benos; Katherine Belov; Michele Clamp; April Cook; James Cuff; Radhika Das; Lance Davidow; Janine E Deakin; Melissa J Fazzari; Jacob L Glass; Manfred Grabherr; John M Greally; Wanjun Gu; Timothy A Hore; Gavin A Huttley; Michael Kleber; Randy L Jirtle; Edda Koina; Jeannie T Lee; Shaun Mahony; Marco A Marra; Robert D Miller; Robert D Nicholls; Mayumi Oda; Anthony T Papenfuss; Zuly E Parra; David D Pollock; David A Ray; Jacqueline E Schein; Terence P Speed; Katherine Thompson; John L VandeBerg; Claire M Wade; Jerilyn A Walker; Paul D Waters; Caleb Webber; Jennifer R Weidman; Xiaohui Xie; Michael C Zody; Jennifer A Marshall Graves; Chris P Ponting; Matthew Breen; Paul B Samollow; Eric S Lander; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2007-05-10       Impact factor: 49.962

View more
  11 in total

Review 1.  3-dimensional imaging modalities for phenotyping genetically engineered mice.

Authors:  K A Powell; D Wilson
Journal:  Vet Pathol       Date:  2011-12-06       Impact factor: 2.221

Review 2.  Whole-animal imaging, gene function, and the Zebrafish Phenome Project.

Authors:  Keith C Cheng; Xuying Xin; Darin P Clark; Patrick La Riviere
Journal:  Curr Opin Genet Dev       Date:  2011-09-28       Impact factor: 5.578

3.  Normalized shape and location of perturbed craniofacial structures in the Xenopus tadpole reveal an innate ability to achieve correct morphology.

Authors:  Laura N Vandenberg; Dany S Adams; Michael Levin
Journal:  Dev Dyn       Date:  2012-03-23       Impact factor: 3.780

4.  Motion-artifact-free in vivo imaging utilizing narcotized avian embryos in ovo.

Authors:  Alexander Heidrich; Lydia Würbach; Thomas Opfermann; Hans Peter Saluz
Journal:  Mol Imaging Biol       Date:  2011-04       Impact factor: 3.488

5.  Conditional ablation of Pten in osteoprogenitors stimulates FGF signaling.

Authors:  Anyonya R Guntur; Martina I Reinhold; Joe Cuellar; Michael C Naski
Journal:  Development       Date:  2011-04       Impact factor: 6.868

6.  An optimized method for delivering flow tracer particles to intravital fluid environments in the developing zebrafish.

Authors:  Michael P Craig; Steven D Gilday; Dana Dabiri; Jay R Hove
Journal:  Zebrafish       Date:  2012-09       Impact factor: 1.985

Review 7.  Finfish and aquatic invertebrate pathology resources for now and the future.

Authors:  Jan M Spitsbergen; Vicki S Blazer; Paul R Bowser; Keith C Cheng; Keith R Cooper; Timothy K Cooper; Salvatore Frasca; David B Groman; Claudia M Harper; Jerry M Mac Law; Gary D Marty; Roxanna M Smolowitz; Judy St Leger; Douglas C Wolf; Jeffrey C Wolf
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2008-10-09       Impact factor: 3.228

8.  The Digital Fish Library: using MRI to digitize, database, and document the morphological diversity of fish.

Authors:  Rachel M Berquist; Kristen M Gledhill; Matthew W Peterson; Allyson H Doan; Gregory T Baxter; Kara E Yopak; Ning Kang; H J Walker; Philip A Hastings; Lawrence R Frank
Journal:  PLoS One       Date:  2012-04-06       Impact factor: 3.240

9.  Time-gated optical projection tomography allows visualization of adult zebrafish internal structures.

Authors:  Luca Fieramonti; Andrea Bassi; Efrem Alessandro Foglia; Anna Pistocchi; Cosimo D'Andrea; Gianluca Valentini; Rinaldo Cubeddu; Sandro De Silvestri; Giulio Cerullo; Franco Cotelli
Journal:  PLoS One       Date:  2012-11-19       Impact factor: 3.240

10.  Tbx22null mice have a submucous cleft palate due to reduced palatal bone formation and also display ankyloglossia and choanal atresia phenotypes.

Authors:  Erwin Pauws; Aya Hoshino; Lucy Bentley; Suresh Prajapati; Charles Keller; Peter Hammond; Juan-Pedro Martinez-Barbera; Gudrun E Moore; Philip Stanier
Journal:  Hum Mol Genet       Date:  2009-07-31       Impact factor: 6.150

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.