Literature DB >> 22146851

3-dimensional imaging modalities for phenotyping genetically engineered mice.

K A Powell1, D Wilson.   

Abstract

A variety of 3-dimensional (3D) digital imaging modalities are available for whole-body assessment of genetically engineered mice: magnetic resonance microscopy (MRM), X-ray microcomputed tomography (microCT), optical projection tomography (OPT), episcopic and cryoimaging, and ultrasound biomicroscopy (UBM). Embryo and adult mouse phenotyping can be accomplished at microscopy or near microscopy spatial resolutions using these modalities. MRM and microCT are particularly well-suited for evaluating structural information at the organ level, whereas episcopic and OPT imaging provide structural and functional information from molecular fluorescence imaging at the cellular level. UBM can be used to monitor embryonic development longitudinally in utero. Specimens are not significantly altered during preparation, and structures can be viewed in their native orientations. Technologies for rapid automated data acquisition and high-throughput phenotyping have been developed and continually improve as this exciting field evolves.

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Year:  2011        PMID: 22146851      PMCID: PMC3857693          DOI: 10.1177/0300985811429814

Source DB:  PubMed          Journal:  Vet Pathol        ISSN: 0300-9858            Impact factor:   2.221


  107 in total

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Authors:  Georgette N Jones; Daphne R Pringle; Zhirong Yin; Michelle M Carlton; Kimerly A Powell; Michael B Weinstein; Ramiro E Toribio; Krista M D La Perle; Lawrence S Kirschner
Journal:  Mol Endocrinol       Date:  2010-06-09

2.  Digimouse: a 3D whole body mouse atlas from CT and cryosection data.

Authors:  Belma Dogdas; David Stout; Arion F Chatziioannou; Richard M Leahy
Journal:  Phys Med Biol       Date:  2007-01-10       Impact factor: 3.609

3.  A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.

Authors:  Y Ma; P R Hof; S C Grant; S J Blackband; R Bennett; L Slatest; M D McGuigan; H Benveniste
Journal:  Neuroscience       Date:  2005-09-13       Impact factor: 3.590

4.  Active staining of mouse embryos for magnetic resonance microscopy.

Authors:  Alexandra Petiet; G Allan Johnson
Journal:  Methods Mol Biol       Date:  2010

5.  Phenotypic variability and craniofacial dysmorphology: increased shape variance in a mouse model for cleft lip.

Authors:  Trish E Parsons; Erika Kristensen; Lynnette Hornung; Virginia M Diewert; Steven K Boyd; Rebecca Z German; Benedikt Hallgrímsson
Journal:  J Anat       Date:  2007-12-17       Impact factor: 2.610

Review 6.  Cause and effect considerations in diagnostic pathology and pathology phenotyping of genetically engineered mice (GEM).

Authors:  Colin McKerlie
Journal:  ILAR J       Date:  2006

7.  Cryo-Imaging of Fluorescently-Labeled Single Cells in a Mouse.

Authors:  Grant J Steyer; Debashish Roy; Olivier Salvado; Meredith E Stone; David L Wilson
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2009-01-01

8.  microMRI-HREM pipeline for high-throughput, high-resolution phenotyping of murine embryos.

Authors:  Guido Pieles; Stefan H Geyer; Dorota Szumska; Jürgen Schneider; Stefan Neubauer; Kieran Clarke; Karl Dorfmeister; Angela Franklyn; Steve D Brown; Shoumo Bhattacharya; Wolfgang J Weninger
Journal:  J Anat       Date:  2007-05-28       Impact factor: 2.610

9.  Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy.

Authors:  Anjum A Sharief; Alexandra Badea; Anders M Dale; G Allan Johnson
Journal:  Neuroimage       Date:  2007-08-29       Impact factor: 6.556

10.  Abnormalities in brain structure and behavior in GSK-3alpha mutant mice.

Authors:  Oksana Kaidanovich-Beilin; Tatiana V Lipina; Keizo Takao; Matthijs van Eede; Satoko Hattori; Christine Laliberté; Mustafa Khan; Kenichi Okamoto; John W Chambers; Paul J Fletcher; Katrina MacAulay; Bradley W Doble; Mark Henkelman; Tsuyoshi Miyakawa; John Roder; James R Woodgett
Journal:  Mol Brain       Date:  2009-11-19       Impact factor: 4.041

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  5 in total

1.  High-resolution Episcopic Microscopy (HREM) - Simple and Robust Protocols for Processing and Visualizing Organic Materials.

Authors:  Stefan H Geyer; Barbara Maurer-Gesek; Lukas F Reissig; Wolfgang J Weninger
Journal:  J Vis Exp       Date:  2017-07-07       Impact factor: 1.355

2.  Resolving complex cartilage structures in developmental biology via deep learning-based automatic segmentation of X-ray computed microtomography images.

Authors:  Jan Matula; Veronika Polakova; Jakub Salplachta; Marketa Tesarova; Tomas Zikmund; Marketa Kaucka; Igor Adameyko; Jozef Kaiser
Journal:  Sci Rep       Date:  2022-05-24       Impact factor: 4.996

Review 3.  Morphometrics, 3D Imaging, and Craniofacial Development.

Authors:  Benedikt Hallgrimsson; Christopher J Percival; Rebecca Green; Nathan M Young; Washington Mio; Ralph Marcucio
Journal:  Curr Top Dev Biol       Date:  2015-10-27       Impact factor: 4.897

4.  Automatic Stem Cell Detection in Microscopic Whole Mouse Cryo-Imaging.

Authors:  Patiwet Wuttisarnwattana; Madhusudhana Gargesha; Wouter van't Hof; Kenneth R Cooke; David L Wilson
Journal:  IEEE Trans Med Imaging       Date:  2015-11-02       Impact factor: 10.048

5.  Optimization of Pulmonary Vasculature Tridimensional Phenotyping in The Rat Fetus.

Authors:  Emrah Aydin; Brittany Levy; Marc Oria; Hussam Nachabe; Foong-Yen Lim; Jose L Peiro
Journal:  Sci Rep       Date:  2019-02-04       Impact factor: 4.379

  5 in total

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