Literature DB >> 18283606

Advances in polyketide synthase structure and function.

Steven G Van Lanen1, Ben Shen.   

Abstract

Recent progress in the understanding of polyketide synthase (PKS) continues to fuel the growth of combinatorial biosynthesis for natural product structural diversity. The structural analysis of many components of PKS, in particular for the modular type I 6-deoxyerythronilide B synthase (DEBS) involved in erythromycin biosynthesis, has provided structural imperatives for the observed biochemistry of DEBS and has enabled the generation of a working structural model of the entire DEBS system. New functions for PKS domains continue to be defined, such as the general control nonderepressible 5 (GCN5) N-acyltransferase strategy for polyketide chain initiation and the true identity of the elusive precursor for the methoxymalonylate extender unit. Novel molecular architectures have been continuously uncovered, including the 'AT-less' PKS and enediyne PKS, thereby expanding the known bacterial PKS paradigms beyond the prototypical type I, II and III PKSs. Finally, the genetic characterization of PKS in vivo and biochemical studies of PKS in vitro have also been greatly facilitated by the application of emerging technologies, such as RNA-mediated gene silencing, reconstitution of an entire polyketide biosynthetic pathway in a model heterologous host and Fourier-transform mass spectroscopy. The application of these technologies is discussed.

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Year:  2008        PMID: 18283606

Source DB:  PubMed          Journal:  Curr Opin Drug Discov Devel        ISSN: 1367-6733


  11 in total

Review 1.  Programming of erythromycin biosynthesis by a modular polyketide synthase.

Authors:  David E Cane
Journal:  J Biol Chem       Date:  2010-06-03       Impact factor: 5.157

2.  Actinopolysporins A-C and tubercidin as a Pdcd4 stabilizer from the halophilic actinomycete Actinopolyspora erythraea YIM 90600.

Authors:  Li-Xing Zhao; Sheng-Xiong Huang; Shu-Kun Tang; Cheng-Lin Jiang; Yanwen Duan; John A Beutler; Curtis J Henrich; James B McMahon; Tobias Schmid; Johanna S Blees; Nancy H Colburn; Scott R Rajski; Ben Shen
Journal:  J Nat Prod       Date:  2011-08-26       Impact factor: 4.050

3.  Total synthesis of (+)-roxaticin via C-C bond forming transfer hydrogenation: a departure from stoichiometric chiral reagents, auxiliaries, and premetalated nucleophiles in polyketide construction.

Authors:  Soo Bong Han; Abbas Hassan; In Su Kim; Michael J Krische
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

Review 4.  Biosynthesis and molecular genetics of polyketides in marine dinoflagellates.

Authors:  Ralf Kellmann; Anke Stüken; Russell J S Orr; Helene M Svendsen; Kjetill S Jakobsen
Journal:  Mar Drugs       Date:  2010-03-31       Impact factor: 5.118

5.  SBSPKS: structure based sequence analysis of polyketide synthases.

Authors:  Swadha Anand; M V R Prasad; Gitanjali Yadav; Narendra Kumar; Jyoti Shehara; Md Zeeshan Ansari; Debasisa Mohanty
Journal:  Nucleic Acids Res       Date:  2010-05-05       Impact factor: 16.971

6.  Characterization of the complete zwittermicin A biosynthesis gene cluster from Bacillus cereus.

Authors:  Brian M Kevany; David A Rasko; Michael G Thomas
Journal:  Appl Environ Microbiol       Date:  2008-12-19       Impact factor: 4.792

7.  Engineered production of iso-migrastatin in heterologous Streptomyces hosts.

Authors:  Zhiyang Feng; Liyan Wang; Scott R Rajski; Zhinan Xu; Marie F Coeffet-LeGal; Ben Shen
Journal:  Bioorg Med Chem       Date:  2008-11-05       Impact factor: 3.641

8.  Characterization of the calicheamicin orsellinate C2-O-methyltransferase CalO6.

Authors:  Shanteri Singh; Nitin S Nandurkar; Jon S Thorson
Journal:  Chembiochem       Date:  2014-07-07       Impact factor: 3.164

9.  SeMPI: a genome-based secondary metabolite prediction and identification web server.

Authors:  Paul F Zierep; Natàlia Padilla; Dimitar G Yonchev; Kiran K Telukunta; Dennis Klementz; Stefan Günther
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

10.  Diverse bacterial PKS sequences derived from okadaic acid-producing dinoflagellates.

Authors:  Roberto Perez; Li Liu; Jose Lopez; Tianying An; Kathleen S Rein
Journal:  Mar Drugs       Date:  2008-05-22       Impact factor: 5.118

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