Literature DB >> 18280161

RNA polymerase: the vehicle of transcription.

Sergei Borukhov1, Evgeny Nudler.   

Abstract

RNA polymerase (RNAP) is the principal enzyme of gene expression and regulation for all three divisions of life: Eukaryota, Archaea and Bacteria. Recent progress in the structural and biochemical characterization of RNAP illuminates this enzyme as a flexible, multifunctional molecular machine. During each step of the transcription cycle, RNAP undergoes elaborate conformational changes. As many fundamental and previously mysterious aspects of how RNAP works begin to be understood, this enzyme reveals intriguing similarities to man-made engineered devices. These resemblances can be found in the mechanics of RNAP-DNA complex formation, in RNA chain initiation and in the elongation processes. Here we highlight recent advances in understanding RNAP function and regulation.

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Year:  2008        PMID: 18280161     DOI: 10.1016/j.tim.2007.12.006

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  52 in total

1.  A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription.

Authors:  Jin Yu; George Oster
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

Review 2.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

Review 3.  Closing the circle: replicating RNA with RNA.

Authors:  Leslie K L Cheng; Peter J Unrau
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-16       Impact factor: 10.005

4.  RNA polymerase II with open and closed trigger loops: active site dynamics and nucleic acid translocation.

Authors:  Michael Feig; Zachary F Burton
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

5.  DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1.

Authors:  Andrey Parshin; Anthony L Shiver; Jookyung Lee; Maria Ozerova; Dina Schneidman-Duhovny; Carol A Gross; Sergei Borukhov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-24       Impact factor: 11.205

Review 6.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

7.  Inactivation of the bacterial RNA polymerase due to acquisition of secondary structure by the ω subunit.

Authors:  Paramita Sarkar; Abhijit A Sardesai; Katsuhiko S Murakami; Dipankar Chatterji
Journal:  J Biol Chem       Date:  2013-07-10       Impact factor: 5.157

8.  The reducible complexity of a mitochondrial molecular machine.

Authors:  Abigail Clements; Dejan Bursac; Xenia Gatsos; Andrew J Perry; Srgjan Civciristov; Nermin Celik; Vladimir A Likic; Sebastian Poggio; Christine Jacobs-Wagner; Richard A Strugnell; Trevor Lithgow
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-26       Impact factor: 11.205

9.  RNA polymerase: a nexus of gene regulation.

Authors:  John D Helmann
Journal:  Methods       Date:  2009-01       Impact factor: 3.608

10.  Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader.

Authors:  Alexander V Yakhnin; Helen Yakhnin; Paul Babitzke
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

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