Literature DB >> 18275190

Solid-state deuterium NMR studies reveal micros-ns motions in the HIV-1 transactivation response RNA recognition site.

Greg L Olsen1, Dorothy C Echodu, Zahra Shajani, Michael F Bardaro, Gabriele Varani, Gary P Drobny.   

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Year:  2008        PMID： 18275190      PMCID： PMC2743919          DOI： 10.1021/ja0778803

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  20 in total

1.  13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.

Authors:  Zahra Shajani; Gabriele Varani
Journal:  J Mol Biol       Date:  2005-04-21       Impact factor: 5.469

2.  Resolving the motional modes that code for RNA adaptation.

Authors:  Qi Zhang; Xiaoyan Sun; Eric D Watt; Hashim M Al-Hashimi
Journal:  Science       Date:  2006-02-03       Impact factor: 47.728

3.  Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation.

Authors:  Kwaku T Dayie; Alexander S Brodsky; James R Williamson
Journal:  J Mol Biol       Date:  2002-03-22       Impact factor: 5.469

4.  Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR 13C relaxation.

Authors:  Elke Duchardt; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2005-08       Impact factor: 2.835

5.  Manifestations of slow site exchange processes in solution NMR: a continuous Gaussian exchange model.

Authors:  J M Schurr; B S Fujimoto; R Diaz; B H Robinson
Journal:  J Magn Reson       Date:  1999-10       Impact factor: 2.229

6.  Conformation of the TAR RNA-arginine complex by NMR spectroscopy.

Authors:  J D Puglisi; R Tan; B J Calnan; A D Frankel; J R Williamson
Journal:  Science       Date:  1992-07-03       Impact factor: 47.728

7.  Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge.

Authors:  F Aboul-ela; J Karn; G Varani
Journal:  Nucleic Acids Res       Date:  1996-10-15       Impact factor: 16.971

8.  Dynamics of bases in hydrated [d(CGCGAATTCGCG)]2.

Authors:  A Kintanar; W C Huang; D C Schindele; D E Wemmer; G Drobny
Journal:  Biochemistry       Date:  1989-01-10       Impact factor: 3.162

9.  The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein.

Authors:  F Aboul-ela; J Karn; G Varani
Journal:  J Mol Biol       Date:  1995-10-20       Impact factor: 5.469

10.  A solid-state 2H NMR investigation of purine motion in a 12 base pair RNA duplex.

Authors:  A C Wang; M A Kennedy; B R Reid; G P Drobny
Journal:  J Magn Reson B       Date:  1994-09
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  26 in total

Review 1.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

2.  Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling.

Authors:  James E Johnson; Charles G Hoogstraten
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

3.  Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis.

Authors:  Elizabeth A Dethoff; Alexandar L Hansen; Catherine Musselman; Eric D Watt; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

4.  RNA dynamics: it is about time.

Authors:  Hashim M Al-Hashimi; Nils G Walter
Journal:  Curr Opin Struct Biol       Date:  2008-06-09       Impact factor: 6.809

Review 5.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

6.  Hydration dependent dynamics in RNA.

Authors:  Greg L Olsen; Michael F Bardaro; Dorothy C Echodu; Gary P Drobny; Gabriele Varani
Journal:  J Biomol NMR       Date:  2009-08-08       Impact factor: 2.835

Review 7.  Domain-elongation NMR spectroscopy yields new insights into RNA dynamics and adaptive recognition.

Authors:  Qi Zhang; Hashim M Al-Hashimi
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

8.  Molecular dynamics simulations identify time scale of conformational changes responsible for conformational selection in molecular recognition of HIV-1 transactivation responsive RNA.

Authors:  Francesco Musiani; Giulia Rossetti; Luciana Capece; Thomas Martin Gerger; Cristian Micheletti; Gabriele Varani; Paolo Carloni
Journal:  J Am Chem Soc       Date:  2014-10-27       Impact factor: 15.419

Review 9.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

10.  Structural and dynamic characterization of the upper part of the HIV-1 cTAR DNA hairpin.

Authors:  Loussiné Zargarian; Igor Kanevsky; Ali Bazzi; Jonathan Boynard; Françoise Chaminade; Philippe Fossé; Olivier Mauffret
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971
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