Literature DB >> 18273062

A novel switch region regulates H-ras membrane orientation and signal output.

Daniel Abankwa1, Michael Hanzal-Bayer, Nicolas Ariotti, Sarah J Plowman, Alemayehu A Gorfe, Robert G Parton, J Andrew McCammon, John F Hancock.   

Abstract

The plasma membrane nanoscale distribution of H-ras is regulated by guanine nucleotide binding. To explore the structural basis of H-ras membrane organization, we combined molecular dynamic simulations and medium-throughput FRET measurements on live cells. We extracted a set of FRET values, termed a FRET vector, to describe the lateral segregation and orientation of H-ras with respect to a large set of nanodomain markers. We show that mutation of basic residues in helix alpha4 or the hypervariable region (HVR) selectively alter the FRET vectors of GTP- or GDP-loaded H-ras, demonstrating a critical role for these residues in stabilizing GTP- or GDP-H-ras interactions with the plasma membrane. By a similar analysis, we find that the beta2-beta3 loop and helix alpha5 are involved in a novel conformational switch that operates through helix alpha4 and the HVR to reorient the H-ras G-domain with respect to the plasma membrane. Perturbation of these switch elements enhances MAPK activation by stabilizing GTP-H-ras in a more productive signalling conformation. The results illustrate how the plasma membrane spatially constrains signalling conformations by acting as a semi-neutral interaction partner.

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Year:  2008        PMID: 18273062      PMCID: PMC2265749          DOI: 10.1038/emboj.2008.10

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  27 in total

1.  GTP-dependent segregation of H-ras from lipid rafts is required for biological activity.

Authors:  I A Prior; A Harding; J Yan; J Sluimer; R G Parton; J F Hancock
Journal:  Nat Cell Biol       Date:  2001-04       Impact factor: 28.824

2.  Observing cell surface signaling domains using electron microscopy.

Authors:  Ian A Prior; Robert G Parton; John F Hancock
Journal:  Sci STKE       Date:  2003-04-08

3.  H-ras, K-ras, and inner plasma membrane raft proteins operate in nanoclusters with differential dependence on the actin cytoskeleton.

Authors:  Sarah J Plowman; Cornelia Muncke; Robert G Parton; John F Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-13       Impact factor: 11.205

Review 4.  Ras plasma membrane signalling platforms.

Authors:  John F Hancock; Robert G Parton
Journal:  Biochem J       Date:  2005-07-01       Impact factor: 3.857

Review 5.  Ras signaling from plasma membrane and endomembrane microdomains.

Authors:  S J Plowman; J F Hancock
Journal:  Biochim Biophys Acta       Date:  2005-06-27

6.  FRET study of membrane proteins: simulation-based fitting for analysis of membrane protein embedment and association.

Authors:  Petr V Nazarov; Rob B M Koehorst; Werner L Vos; Vladimir V Apanasovich; Marcus A Hemminga
Journal:  Biophys J       Date:  2006-04-21       Impact factor: 4.033

7.  An analytic solution to the Förster energy transfer problem in two dimensions.

Authors:  P K Wolber; B S Hudson
Journal:  Biophys J       Date:  1979-11       Impact factor: 4.033

8.  Electron microscopic imaging of Ras signaling domains.

Authors:  John F Hancock; Ian A Prior
Journal:  Methods       Date:  2005-10       Impact factor: 3.608

9.  Structure and dynamics of the full-length lipid-modified H-Ras protein in a 1,2-dimyristoylglycero-3-phosphocholine bilayer.

Authors:  Alemayehu A Gorfe; Michael Hanzal-Bayer; Daniel Abankwa; John F Hancock; J Andrew McCammon
Journal:  J Med Chem       Date:  2007-01-31       Impact factor: 7.446

10.  Individual palmitoyl residues serve distinct roles in H-ras trafficking, microlocalization, and signaling.

Authors:  Sandrine Roy; Sarah Plowman; Barak Rotblat; Ian A Prior; Cornelia Muncke; Sarah Grainger; Robert G Parton; Yoav I Henis; Yoel Kloog; John F Hancock
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

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  104 in total

1.  Revealing conformational substates of lipidated N-Ras protein by pressure modulation.

Authors:  Shobhna Kapoor; Gemma Triola; Ingrid R Vetter; Mirko Erlkamp; Herbert Waldmann; Roland Winter
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

2.  Relation between the conformational heterogeneity and reaction cycle of Ras: molecular simulation of Ras.

Authors:  Chigusa Kobayashi; Shinji Saito
Journal:  Biophys J       Date:  2010-12-01       Impact factor: 4.033

Review 3.  Drugging Ras GTPase: a comprehensive mechanistic and signaling structural view.

Authors:  Shaoyong Lu; Hyunbum Jang; Shuo Gu; Jian Zhang; Ruth Nussinov
Journal:  Chem Soc Rev       Date:  2016-07-11       Impact factor: 54.564

4.  Lipid-Sorting Specificity Encoded in K-Ras Membrane Anchor Regulates Signal Output.

Authors:  Yong Zhou; Priyanka Prakash; Hong Liang; Kwang-Jin Cho; Alemayehu A Gorfe; John F Hancock
Journal:  Cell       Date:  2016-12-29       Impact factor: 41.582

5.  Activation of the MAPK module from different spatial locations generates distinct system outputs.

Authors:  Kerry Inder; Angus Harding; Sarah J Plowman; Mark R Philips; Robert G Parton; John F Hancock
Journal:  Mol Biol Cell       Date:  2008-09-10       Impact factor: 4.138

6.  Coarse-grained modeling of allosteric regulation in protein receptors.

Authors:  Ilya A Balabin; Weitao Yang; David N Beratan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-12       Impact factor: 11.205

7.  System output of the MAPK module is spatially regulated.

Authors:  Kerry Inder; John F Hancock
Journal:  Commun Integr Biol       Date:  2008

8.  Ras membrane orientation and nanodomain localization generate isoform diversity.

Authors:  Daniel Abankwa; Alemayehu A Gorfe; Kerry Inder; John F Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-04       Impact factor: 11.205

9.  Oncogenic K-Ras Binds to an Anionic Membrane in Two Distinct Orientations: A Molecular Dynamics Analysis.

Authors:  Priyanka Prakash; Yong Zhou; Hong Liang; John F Hancock; Alemayehu A Gorfe
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

10.  Overview of simulation studies on the enzymatic activity and conformational dynamics of the GTPase Ras.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  Mol Simul       Date:  2014-03-19       Impact factor: 2.178

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