Literature DB >> 18271525

Rapid isolation and identification of bacteriophage T4-encoded modifications of Escherichia coli RNA polymerase: a generic method to study bacteriophage/host interactions.

Lars F Westblade1, Leonid Minakhin, Konstantin Kuznedelov, Alan J Tackett, Emmanuel J Chang, Rachel A Mooney, Irina Vvedenskaya, Qing Jun Wang, David Fenyö, Michael P Rout, Robert Landick, Brian T Chait, Konstantin Severinov, Seth A Darst.   

Abstract

Bacteriophages are bacterial viruses that infect bacterial cells, and they have developed ingenious mechanisms to modify the bacterial RNA polymerase. Using a rapid, specific, single-step affinity isolation procedure to purify Escherichia coli RNA polymerase from bacteriophage T4-infected cells, we have identified bacteriophage T4-dependent modifications of the host RNA polymerase. We suggest that this methodology is broadly applicable for the identification of bacteriophage-dependent alterations of the host synthesis machinery.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18271525      PMCID: PMC2612130          DOI: 10.1021/pr070451j

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  39 in total

1.  A generic protein purification method for protein complex characterization and proteome exploration.

Authors:  G Rigaut; A Shevchenko; B Rutz; M Wilm; M Mann; B Séraphin
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

2.  The mono-ADP-ribosyltransferases Alt and ModB of bacteriophage T4: target proteins identified.

Authors:  Reinhard Depping; Christiane Lohaus; Helmut E Meyer; Wolfgang Rüger
Journal:  Biochem Biophys Res Commun       Date:  2005-10-07       Impact factor: 3.575

3.  The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase.

Authors:  Sergei Nechaev; Masood Kamali-Moghaddam; Estelle André; Jean-Paul Léonetti; E Peter Geiduschek
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-01       Impact factor: 11.205

4.  Fluorescent proteins as proteomic probes.

Authors:  Ileana M Cristea; Rosemary Williams; Brian T Chait; Michael P Rout
Journal:  Mol Cell Proteomics       Date:  2005-09-09       Impact factor: 5.911

5.  Kap104p: a karyopherin involved in the nuclear transport of messenger RNA binding proteins.

Authors:  J D Aitchison; G Blobel; M P Rout
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

6.  The bacteriophage T4 AsiA protein: a molecular switch for sigma 70-dependent promoters.

Authors:  F Colland; G Orsini; E N Brody; H Buc; A Kolb
Journal:  Mol Microbiol       Date:  1998-02       Impact factor: 3.501

Review 7.  Bacteriophage therapy: a revitalized therapy against bacterial infectious diseases.

Authors:  Shigenobu Matsuzaki; Mohammad Rashel; Jumpei Uchiyama; Shingo Sakurai; Takako Ujihara; Masayuki Kuroda; Masahiko Ikeuchi; Toshikazu Tani; Mikiya Fujieda; Hiroshi Wakiguchi; Shosuke Imai
Journal:  J Infect Chemother       Date:  2005-10       Impact factor: 2.211

8.  DNA-binding determinants of the alpha subunit of RNA polymerase: novel DNA-binding domain architecture.

Authors:  T Gaal; W Ross; E E Blatter; H Tang; X Jia; V V Krishnan; N Assa-Munt; R H Ebright; R L Gourse
Journal:  Genes Dev       Date:  1996-01-01       Impact factor: 11.361

9.  Inhibition of Escherichia coli RNA polymerase by bacteriophage T4 AsiA.

Authors:  E Severinova; K Severinov; S A Darst
Journal:  J Mol Biol       Date:  1998-05-29       Impact factor: 5.469

10.  Proteomic and genomic characterization of chromatin complexes at a boundary.

Authors:  Alan J Tackett; David J Dilworth; Megan J Davey; Michael O'Donnell; John D Aitchison; Michael P Rout; Brian T Chait
Journal:  J Cell Biol       Date:  2005-04-11       Impact factor: 10.539

View more
  11 in total

1.  Improved methodology for the affinity isolation of human protein complexes expressed at near endogenous levels.

Authors:  Michal Domanski; Kelly Molloy; Hua Jiang; Brian T Chait; Michael P Rout; Torben Heick Jensen; John LaCava
Journal:  Biotechniques       Date:  2012-05       Impact factor: 1.993

2.  SepL resembles an aberrant effector in binding to a class 1 type III secretion chaperone and carrying an N-terminal secretion signal.

Authors:  Rasha Younis; Lewis E H Bingle; Sarah Rollauer; Diana Munera; Stephen J Busby; Steven Johnson; Janet E Deane; Susan M Lea; Gad Frankel; Mark J Pallen
Journal:  J Bacteriol       Date:  2010-09-10       Impact factor: 3.490

3.  A pipeline for determining protein-protein interactions and proximities in the cellular milieu.

Authors:  Roman I Subbotin; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2014-08-29       Impact factor: 5.911

4.  Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45.

Authors:  Zhanna Berdygulova; Lars F Westblade; Laurence Florens; Eugene V Koonin; Brian T Chait; Erlan Ramanculov; Michael P Washburn; Seth A Darst; Konstantin Severinov; Leonid Minakhin
Journal:  J Mol Biol       Date:  2010-11-02       Impact factor: 5.469

5.  Engineered high-affinity nanobodies recognizing staphylococcal Protein A and suitable for native isolation of protein complexes.

Authors:  Peter C Fridy; Mary K Thompson; Natalia E Ketaren; Michael P Rout
Journal:  Anal Biochem       Date:  2015-02-21       Impact factor: 3.365

6.  Improved native isolation of endogenous Protein A-tagged protein complexes.

Authors:  John LaCava; Nagarajan Chandramouli; Hua Jiang; Michael P Rout
Journal:  Biotechniques       Date:  2013-04       Impact factor: 1.993

Review 7.  Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions.

Authors:  Yana V Miteva; Hanna G Budayeva; Ileana M Cristea
Journal:  Anal Chem       Date:  2012-12-12       Impact factor: 6.986

8.  Affinity isolation and I-DIRT mass spectrometric analysis of the Escherichia coli O157:H7 Sakai RNA polymerase complex.

Authors:  David J Lee; Stephen J W Busby; Lars F Westblade; Brian T Chait
Journal:  J Bacteriol       Date:  2007-12-14       Impact factor: 3.490

9.  Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.

Authors:  Natacha Opalka; Jesse Brown; William J Lane; Kelly-Anne F Twist; Robert Landick; Francisco J Asturias; Seth A Darst
Journal:  PLoS Biol       Date:  2010-09-14       Impact factor: 8.029

10.  DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes.

Authors:  Matej Butala; Stephen J W Busby; David J Lee
Journal:  Nucleic Acids Res       Date:  2009-01-30       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.