Literature DB >> 23157382

Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions.

Yana V Miteva1, Hanna G Budayeva, Ileana M Cristea.   

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Year:  2012        PMID： 23157382      PMCID： PMC3666915          DOI： 10.1021/ac3033257

Source DB:  PubMed          Journal:  Anal Chem        ISSN： 0003-2700            Impact factor:   6.986


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  243 in total

1.  Identifying transient protein-protein interactions in EphB2 signaling by blue native PAGE and mass spectrometry.

Authors:  Costel C Darie; Katrin Deinhardt; Guoan Zhang; Helene S Cardasis; Moses V Chao; Thomas A Neubert
Journal:  Proteomics       Date:  2011-10-28       Impact factor: 3.984

2.  The Database of Interacting Proteins: 2004 update.

Authors:  Lukasz Salwinski; Christopher S Miller; Adam J Smith; Frank K Pettit; James U Bowie; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 3.  Recent advances in charting protein-protein interaction: mass spectrometry-based approaches.

Authors:  Anne-Claude Gavin; Kenji Maeda; Sebastian Kühner
Journal:  Curr Opin Biotechnol       Date:  2010-10-09       Impact factor: 9.740

Review 4.  Proteomics: a pragmatic perspective.

Authors:  Parag Mallick; Bernhard Kuster
Journal:  Nat Biotechnol       Date:  2010-07-09       Impact factor: 54.908

5.  Purification and characterization of an active N-acetylglucosaminyltransferase enzyme complex from Streptococci.

Authors:  Ren Wu; Meixian Zhou; Hui Wu
Journal:  Appl Environ Microbiol       Date:  2010-10-22       Impact factor: 4.792

6.  Protein solubilization: attend to the choice of lysis buffer.

Authors:  Mandy Peach; Noelle Marsh; Daniel J Macphee
Journal:  Methods Mol Biol       Date:  2012

7.  Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides.

Authors:  Feixia Chu; Peter R Baker; Alma L Burlingame; Robert J Chalkley
Journal:  Mol Cell Proteomics       Date:  2009-10-06       Impact factor: 5.911

8.  Network visualization and analysis of gene expression data using BioLayout Express(3D).

Authors:  Athanasios Theocharidis; Stjin van Dongen; Anton J Enright; Tom C Freeman
Journal:  Nat Protoc       Date:  2009-10-01       Impact factor: 13.491

9.  Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors.

Authors:  Andrew C Paoletti; Tari J Parmely; Chieri Tomomori-Sato; Shigeo Sato; Dongxiao Zhu; Ronald C Conaway; Joan Weliky Conaway; Laurence Florens; Michael P Washburn
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-30       Impact factor: 11.205

10.  Cytoscape 2.8: new features for data integration and network visualization.

Authors:  Michael E Smoot; Keiichiro Ono; Johannes Ruscheinski; Peng-Liang Wang; Trey Ideker
Journal:  Bioinformatics       Date:  2010-12-12       Impact factor: 6.937
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  38 in total

1.  HISTONE DEACETYLASE6 Acts in Concert with Histone Methyltransferases SUVH4, SUVH5, and SUVH6 to Regulate Transposon Silencing.

Authors:  Chun-Wei Yu; Ready Tai; Shen-Chi Wang; Ping Yang; Ming Luo; Songguang Yang; Kai Cheng; Wen-Chun Wang; Yi-Sheng Cheng; Keqiang Wu
Journal:  Plant Cell       Date:  2017-08-04       Impact factor: 11.277

2.  A Gro/TLE-NuRD corepressor complex facilitates Tbx20-dependent transcriptional repression.

Authors:  Erin Kaltenbrun; Todd M Greco; Christopher E Slagle; Leslie M Kennedy; Tuo Li; Ileana M Cristea; Frank L Conlon
Journal:  J Proteome Res       Date:  2013-10-03       Impact factor: 4.466

3.  Ligand-based receptor identification on living cells and tissues using TRICEPS.

Authors:  Andreas P Frei; Hansjoerg Moest; Karel Novy; Bernd Wollscheid
Journal:  Nat Protoc       Date:  2013-06-13       Impact factor: 13.491

4.  A proteomic perspective of inbuilt viral protein regulation: pUL46 tegument protein is targeted for degradation by ICP0 during herpes simplex virus type 1 infection.

Authors:  Aaron E Lin; Todd M Greco; Katinka Döhner; Beate Sodeik; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2013-08-12       Impact factor: 5.911

5.  Quantitative Interactome Proteomics Reveals a Molecular Basis for ATF6-Dependent Regulation of a Destabilized Amyloidogenic Protein.

Authors:  Lars Plate; Bibiana Rius; Bianca Nguyen; Joseph C Genereux; Jeffery W Kelly; R Luke Wiseman
Journal:  Cell Chem Biol       Date:  2019-05-16       Impact factor: 8.116

Review 6.  A mass spectrometry view of stable and transient protein interactions.

Authors:  Hanna G Budayeva; Ileana M Cristea
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

7.  Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics.

Authors:  Joel D Federspiel; Todd M Greco; Krystal K Lum; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2019-04-30       Impact factor: 5.911

8.  Use of Multiple Ion Fragmentation Methods to Identify Protein Cross-Links and Facilitate Comparison of Data Interpretation Algorithms.

Authors:  Bingqing Zhao; Colin P Reilly; Caroline Davis; Andreas Matouschek; James P Reilly
Journal:  J Proteome Res       Date:  2020-06-04       Impact factor: 4.466

9.  Sirtuin 7 plays a role in ribosome biogenesis and protein synthesis.

Authors:  Yuan-Chin Tsai; Todd M Greco; Ileana M Cristea
Journal:  Mol Cell Proteomics       Date:  2013-10-10       Impact factor: 5.911

10.  The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology.

Authors:  Todd M Greco; Benjamin A Diner; Ileana M Cristea
Journal:  Annu Rev Virol       Date:  2014-07-14       Impact factor: 10.431
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