Literature DB >> 18263659

Molecular models predict light-induced glutamine tautomerization in BLUF photoreceptors.

Tatiana Domratcheva1, Bella L Grigorenko, Ilme Schlichting, Alexander V Nemukhin.   

Abstract

The recently discovered photoreceptor proteins containing BLUF (sensor of blue light using FAD) domains mediate physiological responses to blue light in bacteria and euglena. In BLUF domains, blue light activates the flavin chromophore yielding a signaling state characterized by a approximately 10 nm red-shifted absorption. We developed molecular models for the dark and light states of the BLUF domain of the Rhodobacter sphaeroides AppA protein, which are based on the crystal structures and quantum-mechanical simulations. According to these models, photon absorption by the flavin results in a tautomerization and 180 degree rotation of the Gln side chain that interacts with the flavin cofactor. This chemical modification of the Gln residue induces alterations in the hydrogen bond network in the core of the photoreceptor domain, which were observed in numerous spectroscopic experiments. The calculated electronic transition energies and vibrational frequencies of the proposed dark and light states are consistent with the optical and IR spectral changes observed during the photocycle. Light-induced isomerization of an amino acid residue instead of a chromophore represents a feature that has not been described previously in photoreceptors.

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Year:  2008        PMID: 18263659      PMCID: PMC2367200          DOI: 10.1529/biophysj.107.124172

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  49 in total

1.  Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of synechocystis sp. PCC6803.

Authors:  Shinji Masuda; Koji Hasegawa; Asako Ishii; Taka-aki Ono
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

2.  The construction and interpretation of MCSCF wavefunctions.

Authors:  M W Schmidt; M S Gordon
Journal:  Annu Rev Phys Chem       Date:  1998       Impact factor: 12.703

3.  Spectroscopic analysis of the dark relaxation process of a photocycle in a sensor of blue light using FAD (BLUF) protein Slr1694 of the cyanobacterium Synechocystis sp. PCC6803.

Authors:  Koji Hasegawa; Shinji Masuda; Taka-Aki Ono
Journal:  Plant Cell Physiol       Date:  2005-01-19       Impact factor: 4.927

4.  Light induced structural changes of a full-length protein and its BLUF domain in YcgF(Blrp), a blue-light sensing protein that uses FAD (BLUF).

Authors:  Koji Hasegawa; Shinji Masuda; Taka-aki Ono
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

5.  Structure of a novel photoreceptor, the BLUF domain of AppA from Rhodobacter sphaeroides.

Authors:  Spencer Anderson; Vladimira Dragnea; Shinji Masuda; Joel Ybe; Keith Moffat; Carl Bauer
Journal:  Biochemistry       Date:  2005-06-07       Impact factor: 3.162

6.  Light-induced structural changes of apoprotein and chromophore in the sensor of blue light using FAD (BLUF) domain of AppA for a signaling state.

Authors:  Shinji Masuda; Koji Hasegawa; Taka-aki Ono
Journal:  Biochemistry       Date:  2005-02-01       Impact factor: 3.162

7.  A novel photoreaction mechanism for the circadian blue light photoreceptor Drosophila cryptochrome.

Authors:  Alex Berndt; Tilman Kottke; Helena Breitkreuz; Radovan Dvorsky; Sven Hennig; Michael Alexander; Eva Wolf
Journal:  J Biol Chem       Date:  2007-02-12       Impact factor: 5.157

8.  Mechanisms of guanosine triphosphate hydrolysis by Ras and Ras-GAP proteins as rationalized by ab initio QM/MM simulations.

Authors:  Bella L Grigorenko; Alexander V Nemukhin; Maria S Shadrina; Igor A Topol; Stanley K Burt
Journal:  Proteins       Date:  2007-02-01

9.  A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides.

Authors:  Stephan Braatsch; Mark Gomelsky; Silke Kuphal; Gabriele Klug
Journal:  Mol Microbiol       Date:  2002-08       Impact factor: 3.501

10.  AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2.4.1, is a flavoprotein. Identification of a novel fad binding domain.

Authors:  M Gomelsky; S Kaplan
Journal:  J Biol Chem       Date:  1998-12-25       Impact factor: 5.157

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  29 in total

1.  Coupling between the BLUF and EAL domains in the blue light-regulated phosphodiesterase BlrP1.

Authors:  Maria Khrenova; Tatiana Domratcheva; Bella Grigorenko; Alexander Nemukhin
Journal:  J Mol Model       Date:  2010-09-14       Impact factor: 1.810

2.  Molecular mechanism of photoactivation of a light-regulated adenylate cyclase.

Authors:  Mio Ohki; Ayana Sato-Tomita; Shigeru Matsunaga; Mineo Iseki; Jeremy R H Tame; Naoya Shibayama; Sam-Yong Park
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

3.  Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors.

Authors:  Tilo Mathes; Ivo H M van Stokkum; Manuela Stierl; John T M Kennis
Journal:  J Biol Chem       Date:  2012-07-25       Impact factor: 5.157

4.  Femtosecond to Millisecond Dynamics of Light Induced Allostery in the Avena sativa LOV Domain.

Authors:  Agnieszka A Gil; Sergey P Laptenok; Jarrod B French; James N Iuliano; Andras Lukacs; Christopher R Hall; Igor V Sazanovich; Gregory M Greetham; Adelbert Bacher; Boris Illarionov; Markus Fischer; Peter J Tonge; Stephen R Meech
Journal:  J Phys Chem B       Date:  2017-01-25       Impact factor: 2.991

5.  Transient conformational fluctuation of TePixD during a reaction.

Authors:  Kunisato Kuroi; Koji Okajima; Masahiko Ikeuchi; Satoru Tokutomi; Masahide Terazima
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

6.  Photoactivation of the BLUF Protein PixD Probed by the Site-Specific Incorporation of Fluorotyrosine Residues.

Authors:  Agnieszka A Gil; Sergey P Laptenok; James N Iuliano; Andras Lukacs; Anil Verma; Christopher R Hall; Grace E Yoon; Richard Brust; Gregory M Greetham; Michael Towrie; Jarrod B French; Stephen R Meech; Peter J Tonge
Journal:  J Am Chem Soc       Date:  2017-10-05       Impact factor: 15.419

7.  Formation of an unusual glutamine tautomer in a blue light using flavin photocycle characterizes the light-adapted state.

Authors:  Joshua J Goings; Pengfei Li; Qiwen Zhu; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-09       Impact factor: 11.205

8.  Mutational and structural studies of the PixD BLUF output signal that affects light-regulated interactions with PixE.

Authors:  Hua Yuan; Vladimira Dragnea; Qiong Wu; Kevin H Gardner; Carl E Bauer
Journal:  Biochemistry       Date:  2011-06-28       Impact factor: 3.162

9.  Hydrogen bond switching among flavin and amino acid side chains in the BLUF photoreceptor observed by ultrafast infrared spectroscopy.

Authors:  Cosimo Bonetti; Tilo Mathes; Ivo H M van Stokkum; Katharine M Mullen; Marie-Louise Groot; Rienk van Grondelle; Peter Hegemann; John T M Kennis
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

10.  Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Authors:  Thomas R M Barends; Elisabeth Hartmann; Julia J Griese; Thorsten Beitlich; Natalia V Kirienko; Dmitri A Ryjenkov; Jochen Reinstein; Robert L Shoeman; Mark Gomelsky; Ilme Schlichting
Journal:  Nature       Date:  2009-06-18       Impact factor: 49.962

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