Literature DB >> 17917125

Mapping the human brain: new insights from FMRI data sharing.

John Darrell Van Horn1, Alumit Ishai.   

Abstract

The sharing of primary data in the field of neuroscience has received considerable scrutiny from scientific societies and from science journals. Many see this as value added for science publishing that can enhance and inform secondary examination of data and results. Still others worry that data sharing is an undue burden for researchers with little long term value to science. But examples of how data sharing can be done successfully do exist. The fMRI Data Center, established at Dartmouth College in 2000 and now based at the University of California Santa Barbara, has worked to facilitate the open sharing of neuroimaging data from peer-reviewed papers to foster progress in cognitive science. The fMRI study on the representation of objects in the human occipital and temporal cortex, published in 2000 in the Journal of Cognitive Neuroscience (JOCN), marked the first deposition in the new database. Despite initial concerns about fMRI data sharing, this data set was frequently downloaded. We describe the original results of distributed brain activation patterns elicited by faces and objects in the human visual system, and overview several secondary analyses by independent investigators. A philosopher tested Husserl's temporal components of consciousness, whereas other brain imagers deployed new analytic tools, from Dynamic Causal Modeling, which estimates the neural interactions between cortical regions, to a novel method for constructing reproducibility maps. These re-analyses revealed new findings not reported in the original study, provided new perspectives on visual perception, generated new predictions, and resulted in new collaborations and publications in high profile journals.

Entities:  

Mesh:

Year:  2007        PMID: 17917125     DOI: 10.1007/s12021-007-0011-6

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  38 in total

1.  The representation of objects in the human occipital and temporal cortex.

Authors:  A Ishai; L G Ungerleider; A Martin; J V Haxby
Journal:  J Cogn Neurosci       Date:  2000       Impact factor: 3.225

2.  Activity in human frontal cortex associated with spatial working memory and saccadic behavior.

Authors:  B R Postle; J S Berger; A M Taich; M D'Esposito
Journal:  J Cogn Neurosci       Date:  2000       Impact factor: 3.225

3.  A dynamic causal modeling study on category effects: bottom-up or top-down mediation?

Authors:  Andrea Mechelli; Cathy J Price; Uta Noppeney; Karl J Friston
Journal:  J Cogn Neurosci       Date:  2003-10-01       Impact factor: 3.225

Review 4.  Functional MRI and the study of human consciousness.

Authors:  Dan Lloyd
Journal:  J Cogn Neurosci       Date:  2002-08-15       Impact factor: 3.225

5.  A method for generating reproducible evidence in fMRI studies.

Authors:  Michelle Liou; Hong-Ren Su; Juin-Der Lee; John A D Aston; Arthur C Tsai; Philip E Cheng
Journal:  Neuroimage       Date:  2005-10-14       Impact factor: 6.556

6.  Effective connectivity within the distributed cortical network for face perception.

Authors:  Scott L Fairhall; Alumit Ishai
Journal:  Cereb Cortex       Date:  2006-12-26       Impact factor: 5.357

7.  The internet analysis tools registry: a public resource for image analysis.

Authors:  David N Kennedy; Christian Haselgrove
Journal:  Neuroinformatics       Date:  2006

Review 8.  Decoding mental states from brain activity in humans.

Authors:  John-Dylan Haynes; Geraint Rees
Journal:  Nat Rev Neurosci       Date:  2006-07       Impact factor: 34.870

9.  Distributed and overlapping representations of faces and objects in ventral temporal cortex.

Authors:  J V Haxby; M I Gobbini; M L Furey; A Ishai; J L Schouten; P Pietrini
Journal:  Science       Date:  2001-09-28       Impact factor: 47.728

10.  Visual imagery of famous faces: effects of memory and attention revealed by fMRI.

Authors:  Alumit Ishai; James V Haxby; Leslie G Ungerleider
Journal:  Neuroimage       Date:  2002-12       Impact factor: 6.556

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  17 in total

Review 1.  Data publishing and scientific journals: the future of the scientific paper in a world of shared data.

Authors:  Erik De Schutter
Journal:  Neuroinformatics       Date:  2010-10

2.  Improving normal tissue complication probability models: the need to adopt a "data-pooling" culture.

Authors:  Joseph O Deasy; Søren M Bentzen; Andrew Jackson; Randall K Ten Haken; Ellen D Yorke; Louis S Constine; Ashish Sharma; Lawrence B Marks
Journal:  Int J Radiat Oncol Biol Phys       Date:  2010-03-01       Impact factor: 7.038

3.  Interacting with the National Database for Autism Research (NDAR) via the LONI Pipeline workflow environment.

Authors:  Carinna M Torgerson; Catherine Quinn; Ivo Dinov; Zhizhong Liu; Petros Petrosyan; Kevin Pelphrey; Christian Haselgrove; David N Kennedy; Arthur W Toga; John Darrell Van Horn
Journal:  Brain Imaging Behav       Date:  2015-03       Impact factor: 3.978

4.  Data sharing for computational neuroscience.

Authors:  Jeffrey L Teeters; Kenneth D Harris; K Jarrod Millman; Bruno A Olshausen; Friedrich T Sommer
Journal:  Neuroinformatics       Date:  2008-02-08

5.  Musings of a post-stimulus mind...

Authors:  David N Kennedy
Journal:  Neuroinformatics       Date:  2009-05-12

6.  Functional MRI at the crossroads.

Authors:  John Darrell Van Horn; Russell A Poldrack
Journal:  Int J Psychophysiol       Date:  2008-11-18       Impact factor: 2.997

7.  Is it time to re-prioritize neuroimaging databases and digital repositories?

Authors:  John Darrell Van Horn; Arthur W Toga
Journal:  Neuroimage       Date:  2009-04-14       Impact factor: 6.556

8.  Why share data? Lessons learned from the fMRIDC.

Authors:  John Darrell Van Horn; Michael S Gazzaniga
Journal:  Neuroimage       Date:  2012-11-13       Impact factor: 6.556

9.  Human neuroimaging as a "Big Data" science.

Authors:  John Darrell Van Horn; Arthur W Toga
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

10.  Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes.

Authors:  Spiro P Pantazatos; Jianrong Li; Paul Pavlidis; Yves A Lussier
Journal:  Cancer Inform       Date:  2009-06-08
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