Literature DB >> 18249538

An orthogonal purification strategy for isolating crosslinked domains of modular synthases.

Robert W Haushalter1, Andrew S Worthington, Gene H Hur, Michael D Burkart.   

Abstract

Chemo-enzymatic methods for covalently crosslinking carrier proteins with partner enzymes within modular synthases hold promise for elucidating and engineering metabolic pathways. Our efforts to crystallize the ACP-KS complexes of fatty acid synthases have been complicated by difficulties in the purification of the crosslinked complex from the other proteins in the reaction. Here we present a solution that employs an orthogonal purification strategy to achieve the quantity and level of purity necessary for further studies of this complex.

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Year:  2008        PMID: 18249538      PMCID: PMC3269958          DOI: 10.1016/j.bmcl.2008.01.026

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  15 in total

1.  The X-ray crystal structure of beta-ketoacyl [acyl carrier protein] synthase I.

Authors:  J G Olsen; A Kadziola; P von Wettstein-Knowles; M Siggaard-Andersen; Y Lindquist; S Larsen
Journal:  FEBS Lett       Date:  1999-10-22       Impact factor: 4.124

2.  One-pot chemo-enzymatic synthesis of reporter-modified proteins.

Authors:  Andrew S Worthington; Michael D Burkart
Journal:  Org Biomol Chem       Date:  2005-11-24       Impact factor: 3.876

3.  In vivo reporter labeling of proteins via metabolic delivery of coenzyme A analogues.

Authors:  Kristine M Clarke; Andrew C Mercer; James J La Clair; Michael D Burkart
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

4.  Purification of a rat neurotensin receptor expressed in Escherichia coli.

Authors:  J Tucker; R Grisshammer
Journal:  Biochem J       Date:  1996-08-01       Impact factor: 3.857

5.  Proteome-scale purification of human proteins from bacteria.

Authors:  Pascal Braun; Yanhui Hu; Binghua Shen; Allison Halleck; Malvika Koundinya; Ed Harlow; Joshua LaBaer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

6.  Crystal structure of beta-ketoacyl-acyl carrier protein synthase II from E.coli reveals the molecular architecture of condensing enzymes.

Authors:  W Huang; J Jia; P Edwards; K Dehesh; G Schneider; Y Lindqvist
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

Review 7.  Initiation, elongation, and termination strategies in polyketide and polypeptide antibiotic biosynthesis.

Authors:  T A Keating; C T Walsh
Journal:  Curr Opin Chem Biol       Date:  1999-10       Impact factor: 8.822

8.  Isolation and characterization of sfp: a gene that functions in the production of the lipopeptide biosurfactant, surfactin, in Bacillus subtilis.

Authors:  M M Nakano; N Corbell; J Besson; P Zuber
Journal:  Mol Gen Genet       Date:  1992-03

9.  Mechanism-based protein cross-linking probes to investigate carrier protein-mediated biosynthesis.

Authors:  Andrew S Worthington; Heriberto Rivera; Justin W Torpey; Matthew D Alexander; Michael D Burkart
Journal:  ACS Chem Biol       Date:  2006-12-20       Impact factor: 5.100

10.  Identification and analysis of the acyl carrier protein (ACP) docking site on beta-ketoacyl-ACP synthase III.

Authors:  Y M Zhang; M S Rao; R J Heath; A C Price; A J Olson; C O Rock; S W White
Journal:  J Biol Chem       Date:  2000-11-14       Impact factor: 5.157

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  12 in total

1.  Probing the selectivity and protein·protein interactions of a nonreducing fungal polyketide synthase using mechanism-based crosslinkers.

Authors:  Joel Bruegger; Robert W Haushalter; Bob Haushalter; Anna L Vagstad; Anna Vagstad; Gaurav Shakya; Nathan Mih; Craig A Townsend; Michael D Burkart; Shiou-Chuan Tsai
Journal:  Chem Biol       Date:  2013-08-29

2.  Binding and "pKa" modulation of a polycyclic substrate analogue in a type II polyketide acyl carrier protein.

Authors:  Robert W Haushalter; Fabian V Filipp; Kwang-Seuk Ko; Ricky Yu; Stanley J Opella; Michael D Burkart
Journal:  ACS Chem Biol       Date:  2011-02-22       Impact factor: 5.100

3.  A mechanism based protein crosslinker for acyl carrier protein dehydratases.

Authors:  Jordan L Meier; Robert W Haushalter; Michael D Burkart
Journal:  Bioorg Med Chem Lett       Date:  2010-06-17       Impact factor: 2.823

4.  Polyketide mimetics yield structural and mechanistic insights into product template domain function in nonreducing polyketide synthases.

Authors:  Jesus F Barajas; Gaurav Shakya; Gabriel Moreno; Heriberto Rivera; David R Jackson; Caitlyn L Topper; Anna L Vagstad; James J La Clair; Craig A Townsend; Michael D Burkart; Shiou-Chuan Tsai
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-08       Impact factor: 11.205

5.  Resin-based investigation of acyl carrier protein interaction networks in Escherichia coli.

Authors:  Michael Rothmann; Sherry Niessen; Robert W Haushalter; Benjamin F Cravatt; Michael D Burkart
Journal:  Bioorg Med Chem       Date:  2011-10-31       Impact factor: 3.641

6.  Matching Protein Interfaces for Improved Medium-Chain Fatty Acid Production.

Authors:  Stephen Sarria; Thomas G Bartholow; Adam Verga; Michael D Burkart; Pamela Peralta-Yahya
Journal:  ACS Synth Biol       Date:  2018-05-03       Impact factor: 5.110

7.  Resin supported acyl carrier protein labeling strategies.

Authors:  Michael Rothmann; Nicolas M Kosa; Michael D Burkart
Journal:  RSC Adv       Date:  2014       Impact factor: 3.361

8.  Probing the compatibility of type II ketosynthase-carrier protein partners.

Authors:  Andrew S Worthington; Gene H Hur; Jordan L Meier; Qian Cheng; Bradley S Moore; Michael D Burkart
Journal:  Chembiochem       Date:  2008-09-01       Impact factor: 3.164

Review 9.  Structural analysis of protein-protein interactions in type I polyketide synthases.

Authors:  Wei Xu; Kangjian Qiao; Yi Tang
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-12-19       Impact factor: 8.250

10.  PKS-NRPS Enzymology and Structural Biology: Considerations in Protein Production.

Authors:  Meredith A Skiba; Finn P Maloney; Qingyun Dan; Amy E Fraley; Courtney C Aldrich; Janet L Smith; W Clay Brown
Journal:  Methods Enzymol       Date:  2018-03-16       Impact factor: 1.600

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