Literature DB >> 18229715

Assisted curation: does text mining really help?

Beatrice Alex1, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, Xinglong Wang.   

Abstract

Although text mining shows considerable promise as a tool for supporting the curation of biomedical text, there is little concrete evidence as to its effectiveness. We report on three experiments measuring the extent to which curation can be speeded up with assistance from Natural Language Processing (NLP), together with subjective feedback from curators on the usability of a curation tool that integrates NLP hypotheses for protein-protein interactions (PPIs). In our curation scenario, we found that a maximum speed-up of 1/3 in curation time can be expected if NLP output is perfectly accurate. The preference of one curator for consistent NLP output and output with high recall needs to be confirmed in a larger study with several curators.

Mesh:

Year:  2008        PMID: 18229715

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  30 in total

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2.  TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK.

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5.  Biomedical text mining for research rigor and integrity: tasks, challenges, directions.

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Authors:  Nathan Harmston; Wendy Filsell; Michael P H Stumpf
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9.  Disambiguating the species of biomedical named entities using natural language parsers.

Authors:  Xinglong Wang; Jun'ichi Tsujii; Sophia Ananiadou
Journal:  Bioinformatics       Date:  2010-01-06       Impact factor: 6.937

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Journal:  Database (Oxford)       Date:  2013-04-18       Impact factor: 3.451

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