Literature DB >> 20827444

TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK.

K Bretonnel Cohen, Hong Yu, Philip E Bourne, Lynette Hirschman.   

Abstract

Year:  2008        PMID： 20827444      PMCID： PMC2934913     

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN： 2335-6928


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  11 in total

1.  A simple algorithm for identifying abbreviation definitions in biomedical text.

Authors:  Ariel S Schwartz; Marti A Hearst
Journal:  Pac Symp Biocomput       Date:  2003

2.  Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example.

Authors:  Yoshinobu Kano; Ngan Nguyen; Rune Saetre; Kazuhiro Yoshida; Yusuke Miyao; Yoshimasa Tsuruoka; Yuichiro Matsubayashi; Sophia Ananiadou; Jun'ichi Tsujii
Journal:  Pac Symp Biocomput       Date:  2008

3.  Information needs and the role of text mining in drug development.

Authors:  Phoebe M Roberts; William S Hayes
Journal:  Pac Symp Biocomput       Date:  2008

4.  Comparing usability of matching techniques for normalising biomedical named entities.

Authors:  Xinglong Wang; Michael Matthews
Journal:  Pac Symp Biocomput       Date:  2008

5.  Assisted curation: does text mining really help?

Authors:  Beatrice Alex; Claire Grover; Barry Haddow; Mijail Kabadjov; Ewan Klein; Michael Matthews; Stuart Roebuck; Richard Tobin; Xinglong Wang
Journal:  Pac Symp Biocomput       Date:  2008

6.  Enabling integrative genomic analysis of high-impact human diseases through text mining.

Authors:  Joel Dudley; Atul J Butte
Journal:  Pac Symp Biocomput       Date:  2008

7.  BANNER: an executable survey of advances in biomedical named entity recognition.

Authors:  Robert Leaman; Graciela Gonzalez
Journal:  Pac Symp Biocomput       Date:  2008

8.  Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.

Authors:  J Gregory Caporaso; Nita Deshpande; J Lynn Fink; Philip E Bourne; K Bretonnel Cohen; Lawrence Hunter
Journal:  Pac Symp Biocomput       Date:  2008

9.  Evidence for showing gene/protein name suggestions in bioscience literature search interfaces.

Authors:  Anna Divoli; Marti A Hearst; Michael A Wooldridge
Journal:  Pac Symp Biocomput       Date:  2008

10.  Toward information extraction: identifying protein names from biological papers.

Authors:  K Fukuda; A Tamura; T Tsunoda; T Takagi
Journal:  Pac Symp Biocomput       Date:  1998
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  6 in total

Review 1.  Frontiers of biomedical text mining: current progress.

Authors:  Pierre Zweigenbaum; Dina Demner-Fushman; Hong Yu; Kevin B Cohen
Journal:  Brief Bioinform       Date:  2007-10-30       Impact factor: 11.622

2.  Reproducibility in Natural Language Processing: A Case Study of Two R Libraries for Mining PubMed/MEDLINE.

Authors:  K Bretonnel Cohen; Jingbo Xia; Christophe Roeder; Lawrence E Hunter
Journal:  LREC Int Conf Lang Resour Eval       Date:  2016-05

3.  The first step in the development of Text Mining technology for Cancer Risk Assessment: identifying and organizing scientific evidence in risk assessment literature.

Authors:  Anna Korhonen; Ilona Silins; Lin Sun; Ulla Stenius
Journal:  BMC Bioinformatics       Date:  2009-09-22       Impact factor: 3.169

4.  Text mining for literature review and knowledge discovery in cancer risk assessment and research.

Authors:  Anna Korhonen; Diarmuid O Séaghdha; Ilona Silins; Lin Sun; Johan Högberg; Ulla Stenius
Journal:  PLoS One       Date:  2012-04-12       Impact factor: 3.240

5.  A comparison and user-based evaluation of models of textual information structure in the context of cancer risk assessment.

Authors:  Yufan Guo; Anna Korhonen; Maria Liakata; Ilona Silins; Johan Hogberg; Ulla Stenius
Journal:  BMC Bioinformatics       Date:  2011-03-08       Impact factor: 3.169

6.  Natural language processing in aid of FlyBase curators.

Authors:  Nikiforos Karamanis; Ruth Seal; Ian Lewin; Peter McQuilton; Andreas Vlachos; Caroline Gasperin; Rachel Drysdale; Ted Briscoe
Journal:  BMC Bioinformatics       Date:  2008-04-14       Impact factor: 3.169
  6 in total

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