Literature DB >> 18213405

Informatics and computational strategies for the study of lipids.

Laxman Yetukuri1, Kim Ekroos, Antonio Vidal-Puig, Matej Oresic.   

Abstract

Recent advances in mass spectrometry (MS)-based techniques for lipidomic analysis have empowered us with the tools that afford studies of lipidomes at the systems level. However, these techniques pose a number of challenges for lipidomic raw data processing, lipid informatics, and the interpretation of lipidomic data in the context of lipid function and structure. Integration of lipidomic data with other systemic levels, such as genomic or proteomic, in the context of molecular pathways and biophysical processes provides a basis for the understanding of lipid function at the systems level. The present report, based on the limited literature, is an update on a young but rapidly emerging field of lipid informatics and related pathway reconstruction strategies.

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Year:  2007        PMID: 18213405     DOI: 10.1039/b715468b

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  56 in total

Review 1.  Spatial organization of transmembrane receptor signalling.

Authors:  Ioanna Bethani; Sigrid S Skånland; Ivan Dikic; Amparo Acker-Palmer
Journal:  EMBO J       Date:  2010-08-18       Impact factor: 11.598

2.  Toward Complete Structure Elucidation of Glycerophospholipids in the Gas Phase through Charge Inversion Ion/Ion Chemistry.

Authors:  Caitlin E Randolph; Stephen J Blanksby; Scott A McLuckey
Journal:  Anal Chem       Date:  2019-12-09       Impact factor: 6.986

Review 3.  Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation.

Authors:  Jeremy P Koelmel; Candice Z Ulmer; Christina M Jones; Richard A Yost; John A Bowden
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2017-03-02       Impact factor: 4.698

4.  The Ligand Binding Landscape of Diacylglycerol Kinases.

Authors:  Caroline E Franks; Sean T Campbell; Benjamin W Purow; Thurl E Harris; Ku-Lung Hsu
Journal:  Cell Chem Biol       Date:  2017-07-14       Impact factor: 8.116

5.  Plasma membranes are poised for activation of raft phase coalescence at physiological temperature.

Authors:  Daniel Lingwood; Jonas Ries; Petra Schwille; Kai Simons
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-09       Impact factor: 11.205

6.  The challenges for molecular nutrition research 2: quantification of the nutritional phenotype.

Authors:  Ben van Ommen; Jaap Keijer; Robert Kleemann; Ruan Elliott; Christian A Drevon; Harry McArdle; Mike Gibney; Michael Müller
Journal:  Genes Nutr       Date:  2008-06-25       Impact factor: 5.523

7.  Decreases in Phospholipids Containing Adrenic and Arachidonic Acids Occur in the Human Hippocampus over the Adult Lifespan.

Authors:  Sarah E Hancock; Michael G Friedrich; Todd W Mitchell; Roger J W Truscott; Paul L Else
Journal:  Lipids       Date:  2015-05-23       Impact factor: 1.880

Review 8.  Shotgun lipidomics on high resolution mass spectrometers.

Authors:  Dominik Schwudke; Kai Schuhmann; Ronny Herzog; Stefan R Bornstein; Andrej Shevchenko
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-09-01       Impact factor: 10.005

9.  Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry.

Authors:  Christer S Ejsing; Julio L Sampaio; Vineeth Surendranath; Eva Duchoslav; Kim Ekroos; Robin W Klemm; Kai Simons; Andrej Shevchenko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-27       Impact factor: 11.205

10.  Lipidomics: a tool for studies of atherosclerosis.

Authors:  Kim Ekroos; Minna Jänis; Kirill Tarasov; Reini Hurme; Reijo Laaksonen
Journal:  Curr Atheroscler Rep       Date:  2010-07       Impact factor: 5.113

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