Literature DB >> 18201088

Stacking energies for average B-DNA structures from the combined density functional theory and symmetry-adapted perturbation theory approach.

Annamaria Fiethen1, Georg Jansen, Andreas Hesselmann, Martin Schütz.   

Abstract

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Year:  2008        PMID： 18201088     DOI： 10.1021/ja076781m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  6 in total

1.  How does modification of adenine by hydroxyl radical influence the stability and the nature of stacking interactions in adenine-cytosine complex?

Authors:  Zaneta Czyznikowska
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2.  Computational model for predicting experimental RNA and DNA nearest-neighbor free energy rankings.

Authors:  Charles A Johnson; Richard J Bloomingdale; Vikram E Ponnusamy; Conor A Tillinghast; Brent M Znosko; Michael Lewis
Journal:  J Phys Chem B       Date:  2011-06-30       Impact factor: 2.991

3.  Development of CHARMM polarizable force field for nucleic acid bases based on the classical Drude oscillator model.

Authors:  Christopher M Baker; Victor M Anisimov; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2010-12-17       Impact factor: 2.991

4.  Impact of geometry optimization on base-base stacking interaction energies in the canonical A- and B-forms of DNA.

Authors:  Ashley Ringer McDonald; Elizabeth J Denning; Alexander D MacKerell
Journal:  J Phys Chem A       Date:  2013-02-12       Impact factor: 2.781

Review 5.  The expanded genetic alphabet.

Authors:  Denis A Malyshev; Floyd E Romesberg
Journal:  Angew Chem Int Ed Engl       Date:  2015-08-25       Impact factor: 15.336

6.  A Computational Model for Predicting Experimental RNA Nearest-Neighbor Free Energy Rankings: Inosine•Uridine Pairs.

Authors:  Elizabeth A Jolley; Michael Lewis; Brent M Znosko
Journal:  Chem Phys Lett       Date:  2015-10-16       Impact factor: 2.328
  6 in total

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