| Literature DB >> 32447472 |
Abhishek A Kognole1, Asaminew H Aytenfisu1, Alexander D MacKerell2.
Abstract
Polarizable force fields are emerging as a more accurate alternative to additive force fields in terms of modeling and simulations of a variety of chemicals including biomolecules. Explicit treatment of induced polarization in charged species such as phosphates and sulfates offers the potential for achieving an improved atomistic understanding of the physical forces driving their interactions with their environments. To help achieve this, in this study we present balanced Drude polarizable force field parameters for molecular ions including phosphates, sulfates, sulfamates, and oxides. Better balance was primarily achieved in the relative values of minimum interaction energies and distances of the anionic model compounds with water at the Drude and quantum mechanical (QM) model chemistries. Parametrization involved reoptimizing available parameters as well as extending the force field to new molecules with the goal of achieving self-consistency with respect to the Lennard-Jones and electrostatic parameters targeting QM and experimental hydration free energies. The resulting force field parameters achieve consistent treatment across the studied anions, facilitating more balanced simulations of biomolecules and small organic molecules in the context of the classical Drude polarizable force field. Graphical abstract.Entities:
Keywords: CHARMM; Molecular dynamics; Molecular ions; Molecular modeling; Polarizable force field
Year: 2020 PMID: 32447472 PMCID: PMC7326346 DOI: 10.1007/s00894-020-04399-0
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810