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Literature DB >> 18192385

Polarity in archaeal operon transcription in Thermococcus kodakaraensis.

Thomas J Santangelo¹, L'ubomíra Cubonová, Rie Matsumi, Haruyuki Atomi, Tadayuki Imanaka, John N Reeve.

Abstract

An in vivo archaeal gene reporter system has been established based on TK1761, a gene that encodes a nonessential beta-glycosidase in Thermococcus kodakaraensis. Following the introduction of nonsense codons into promoter-proximal genes, polarity in operon expression in this archaeon has been established by both microarray hybridization assays and a reporter gene expression system.

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Year: 2008 PMID： 18192385 PMCID： PMC2258858 DOI： 10.1128/JB.01811-07

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

29 in total

1. Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance.

Authors: Rie Matsumi; Kenji Manabe; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal: J Bacteriol Date: 2007-01-26 Impact factor: 3.490

2. TFB1 or TFB2 is sufficient for Thermococcus kodakaraensis viability and for basal transcription in vitro.

Authors: Thomas J Santangelo; L'ubomíra Cubonová; Cindy L James; John N Reeve
Journal: J Mol Biol Date: 2006-12-30 Impact factor: 5.469

3. Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1.

Authors: Haruyuki Atomi; Toshiaki Fukui; Tamotsu Kanai; Masaaki Morikawa; Tadayuki Imanaka
Journal: Archaea Date: 2004-10 Impact factor: 3.273

4. Phosphoenolpyruvate synthase plays an essential role for glycolysis in the modified Embden-Meyerhof pathway in Thermococcus kodakarensis.

Authors: Hiroyuki Imanaka; Atsushi Yamatsu; Toshiaki Fukui; Haruyuki Atomi; Tadayuki Imanaka
Journal: Mol Microbiol Date: 2006-08 Impact factor: 3.501

5. Termination factor for RNA synthesis.

Authors: J W Roberts
Journal: Nature Date: 1969-12-20 Impact factor: 49.962

6. The nif gene operon of the methanogenic archaeon Methanococcus maripaludis.

Authors: P S Kessler; C Blank; J A Leigh
Journal: J Bacteriol Date: 1998-03 Impact factor: 3.490

7. Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

Authors: Takaaki Sato; Haruyuki Atomi; Tadayuki Imanaka
Journal: Science Date: 2007-02-16 Impact factor: 47.728

8. Gene analysis and enzymatic properties of thermostable beta-glycosidase from Pyrococcus kodakaraensis KOD1.

Authors: S Ezaki; K Miyaoku; K Nishi; T Tanaka; S Fujiwara; M Takagi; H Atomi; T Imanaka
Journal: J Biosci Bioeng Date: 1999 Impact factor: 2.894

Review 9. Rho-dependent transcription termination: more questions than answers.

Authors: Sharmistha Banerjee; Jisha Chalissery; Irfan Bandey; Ranjan Sen
Journal: J Microbiol Date: 2006-02 Impact factor: 3.422

10. Release of polarity in Escherichia coli by gene N of phage lambda: termination and antitermination of transcription.

Authors: S Adhya; M Gottesman; B De Crombrugghe
Journal: Proc Natl Acad Sci U S A Date: 1974-06 Impact factor: 11.205

27 in total

1. Thermococcus kodakarensis as a host for gene expression and protein secretion.

Authors: Ryo Takemasa; Yuusuke Yokooji; Atsushi Yamatsu; Haruyuki Atomi; Tadayuki Imanaka
Journal: Appl Environ Microbiol Date: 2011-01-28 Impact factor: 4.792

2. Deletion of switch 3 results in an archaeal RNA polymerase that is defective in transcript elongation.

Authors: Thomas J Santangelo; John N Reeve
Journal: J Biol Chem Date: 2010-05-28 Impact factor: 5.157

3. Natural competence in the hyperthermophilic archaeon Pyrococcus furiosus facilitates genetic manipulation: construction of markerless deletions of genes encoding the two cytoplasmic hydrogenases.

Authors: Gina L Lipscomb; Karen Stirrett; Gerrit J Schut; Fei Yang; Francis E Jenney; Robert A Scott; Michael W W Adams; Janet Westpheling
Journal: Appl Environ Microbiol Date: 2011-02-11 Impact factor: 4.792

4. Modulation of Rho-dependent transcription termination in Escherichia coli by the H-NS family of proteins.

Authors: Shivalika Saxena; J Gowrishankar
Journal: J Bacteriol Date: 2011-05-20 Impact factor: 3.490

Review 5. Transcription Regulation in Archaea.

Authors: Alexandra M Gehring; Julie E Walker; Thomas J Santangelo
Journal: J Bacteriol Date: 2016-06-27 Impact factor: 3.490

6. Archaeal physiology: The secrets of termination.

Authors: Roger A Garrett
Journal: Nat Microbiol Date: 2016-09-27 Impact factor: 17.745

7. Archaeal transcription.

Authors: Breanna R Wenck; Thomas J Santangelo
Journal: Transcription Date: 2020-10-28

8. Factor-dependent archaeal transcription termination.

Authors: Julie E Walker; Olivia Luyties; Thomas J Santangelo
Journal: Proc Natl Acad Sci U S A Date: 2017-07-31 Impact factor: 11.205

9. Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins.

Authors: Nicolas Soler; Evelyne Marguet; Diego Cortez; Nicole Desnoues; Jenny Keller; Herman van Tilbeurgh; Guennadi Sezonov; Patrick Forterre
Journal: Nucleic Acids Res Date: 2010-04-18 Impact factor: 16.971

10. Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and eIF2B regulation.

Authors: Kamal Dev; Thomas J Santangelo; Stefan Rothenburg; Dante Neculai; Madhusudan Dey; Frank Sicheri; Thomas E Dever; John N Reeve; Alan G Hinnebusch
Journal: J Mol Biol Date: 2009-07-17 Impact factor: 5.469