Literature DB >> 18191648

Terminal RNA uridylyltransferases of trypanosomes.

Ruslan Aphasizhev1, Inna Aphasizheva.   

Abstract

Terminal RNA uridylyltransferases (TUTases) are functionally and structurally diverse nucleotidyl transferases that catalyze template-independent 3' uridylylation of RNAs. Within the DNA polymerase beta-type superfamily, TUTases are closely related to non-canonical poly(A) polymerases. Studies of U-insertion/deletion RNA editing in mitochondria of trypanosomatids identified the first TUTase proteins and their cellular functions: post-transcriptional uridylylation of guide RNAs by RNA editing TUTase 1 (RET1) and U-insertion mRNA editing by RNA editing TUTase 2 (RET2). The editing TUTases possess conserved catalytic and nucleotide base recognition domains, yet differ in quaternary structure, substrate specificity and processivity. The cytosolic TUTases TUT3 and TUT4 have also been identified in trypanosomes but their biological roles remain to be established. Structural analyses have revealed a mechanism of cognate nucleoside triphosphate selection by TUTases, which includes protein-UTP contacts as well as contribution of the RNA substrate. This review focuses on biological functions and structures of trypanosomal TUTases.

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Year:  2007        PMID: 18191648      PMCID: PMC2364610          DOI: 10.1016/j.bbagrm.2007.12.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  67 in total

1.  Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21.

Authors:  U F Müller; L Lambert; H U Göringer
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

2.  Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing.

Authors:  R P Igo; S S Palazzo; M L Burgess; A K Panigrahi; K Stuart
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

3.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

4.  RNA degradation by the exosome is promoted by a nuclear polyadenylation complex.

Authors:  John LaCava; Jonathan Houseley; Cosmin Saveanu; Elisabeth Petfalski; Elizabeth Thompson; Alain Jacquier; David Tollervey
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

5.  Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase.

Authors:  Françoise Wyers; Mathieu Rougemaille; Gwenaël Badis; Jean-Claude Rousselle; Marie-Elisabeth Dufour; Jocelyne Boulay; Béatrice Régnault; Frédéric Devaux; Abdelkader Namane; Bertrand Séraphin; Domenico Libri; Alain Jacquier
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

6.  A family of poly(U) polymerases.

Authors:  Jae Eun Kwak; Marvin Wickens
Journal:  RNA       Date:  2007-04-20       Impact factor: 4.942

7.  UTP-dependent and -independent pathways of mRNA turnover in Trypanosoma brucei mitochondria.

Authors:  K T Militello; L K Read
Journal:  Mol Cell Biol       Date:  2000-04       Impact factor: 4.272

8.  Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases.

Authors:  Jason Stagno; Inna Aphasizheva; Ruslan Aphasizhev; Hartmut Luecke
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-04       Impact factor: 11.205

9.  A new yeast poly(A) polymerase complex involved in RNA quality control.

Authors:  Stepánka Vanácová; Jeannette Wolf; Georges Martin; Diana Blank; Sabine Dettwiler; Arno Friedlein; Hanno Langen; Gérard Keith; Walter Keller
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

10.  RNA editing in Trypanosoma brucei requires three different editosomes.

Authors:  Jason Carnes; James Raffaello Trotter; Adam Peltan; Michele Fleck; Kenneth Stuart
Journal:  Mol Cell Biol       Date:  2007-10-22       Impact factor: 4.272

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  15 in total

1.  Novel TUTase associates with an editosome-like complex in mitochondria of Trypanosoma brucei.

Authors:  Inna Aphasizheva; Gene-Errol Ringpis; James Weng; Paul D Gershon; Richard H Lathrop; Ruslan Aphasizhev
Journal:  RNA       Date:  2009-05-22       Impact factor: 4.942

2.  Structure of a mitochondrial ribosome with minimal RNA.

Authors:  Manjuli R Sharma; Timothy M Booth; Larry Simpson; Dmitri A Maslov; Rajendra K Agrawal
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-03       Impact factor: 11.205

3.  Mechanism of U insertion RNA editing in trypanosome mitochondria: the bimodal TUTase activity of the core complex.

Authors:  Gene-Errol Ringpis; Inna Aphasizheva; Xiaorong Wang; Lan Huang; Richard H Lathrop; G Wesley Hatfield; Ruslan Aphasizhev
Journal:  J Mol Biol       Date:  2010-04-01       Impact factor: 5.469

4.  Complete set of mitochondrial pan-edited mRNAs in Leishmania mexicana amazonensis LV78.

Authors:  Dmitri A Maslov
Journal:  Mol Biochem Parasitol       Date:  2010-06-01       Impact factor: 1.759

Review 5.  Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

6.  Structure of the mitochondrial editosome-like complex associated TUTase 1 reveals divergent mechanisms of UTP selection and domain organization.

Authors:  Jason Stagno; Inna Aphasizheva; Jessica Bruystens; Hartmut Luecke; Ruslan Aphasizhev
Journal:  J Mol Biol       Date:  2010-04-18       Impact factor: 5.469

Review 7.  Mitochondrial RNA processing in trypanosomes.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Res Microbiol       Date:  2011-05-01       Impact factor: 3.992

8.  Identification and characterization of nuclear non-canonical poly(A) polymerases from Trypanosoma brucei.

Authors:  Ronald D Etheridge; Daniel M Clemens; Paul D Gershon; Ruslan Aphasizhev
Journal:  Mol Biochem Parasitol       Date:  2008-11-25       Impact factor: 1.759

9.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

10.  Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes.

Authors:  Jeffrey G Reid; Ankur K Nagaraja; Francis C Lynn; Rafal B Drabek; Donna M Muzny; Chad A Shaw; Michelle K Weiss; Arash O Naghavi; Mahjabeen Khan; Huifeng Zhu; Jayantha Tennakoon; Gemunu H Gunaratne; David B Corry; Jonathan Miller; Michael T McManus; Michael S German; Richard A Gibbs; Martin M Matzuk; Preethi H Gunaratne
Journal:  Genome Res       Date:  2008-07-09       Impact factor: 9.043

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