Literature DB >> 18185982

Characterizing the chromosomes of the platypus (Ornithorhynchus anatinus).

Daniel McMillan1, Pat Miethke, Amber E Alsop, Willem Rens, Patricia O'Brien, Vladimir Trifonov, Frederic Veyrunes, Kyriena Schatzkamer, Colin L Kremitzki, Tina Graves, Wesley Warren, Frank Grützner, Malcolm A Ferguson-Smith, Jennifer A Marshall Graves.   

Abstract

Like the unique platypus itself, the platypus genome is extraordinary because of its complex sex chromosome system, and is controversial because of difficulties in identification of small autosomes and sex chromosomes. A 6-fold shotgun sequence of the platypus genome is now available and is being assembled with the help of physical mapping. It is therefore essential to characterize the chromosomes and resolve the ambiguities and inconsistencies in identifying autosomes and sex chromosomes. We have used chromosome paints and DAPI banding to identify and classify pairs of autosomes and sex chromosomes. We have established an agreed nomenclature and identified anchor BAC clones for each chromosome that will ensure unambiguous gene localizations.

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Mesh：

Year:  2008        PMID： 18185982     DOI： 10.1007/s10577-007-1186-2

Source DB:  PubMed          Journal:  Chromosome Res        ISSN： 0967-3849            Impact factor:   5.239


  25 in total

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Authors:  J M VAN BRINK
Journal:  Chromosoma       Date:  1959       Impact factor: 4.316

Review 2.  A platypus' eye view of the mammalian genome.

Authors:  Frank Grützner; Jennifer A Marshall Graves
Journal:  Curr Opin Genet Dev       Date:  2004-12       Impact factor: 5.578

3.  Cross-species chromosome painting.

Authors:  Willem Rens; Beiyuan Fu; Patricia C M O'Brien; Malcolm Ferguson-Smith
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  Karyotypic conservation in the mammalian order monotremata (subclass Prototheria).

Authors:  J M Wrigley; J A Graves
Journal:  Chromosoma       Date:  1988       Impact factor: 4.316

5.  Sex chromosome homology and incomplete, tissue-specific X-inactivation suggest that monotremes represent an intermediate stage of mammalian sex chromosome evolution.

Authors:  J M Wrigley; J A Graves
Journal:  J Hered       Date:  1988 Mar-Apr       Impact factor: 2.645

6.  DMRT gene cluster analysis in the platypus: new insights into genomic organization and regulatory regions.

Authors:  Nisrine El-Mogharbel; Matthew Wakefield; Janine E Deakin; Enkhjargal Tsend-Ayush; Frank Grützner; Amber Alsop; Tariq Ezaz; Jennifer A Marshall Graves
Journal:  Genomics       Date:  2006-09-07       Impact factor: 5.736

7.  Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes.

Authors:  H Telenius; A H Pelmear; A Tunnacliffe; N P Carter; A Behmel; M A Ferguson-Smith; M Nordenskjöld; R Pfragner; B A Ponder
Journal:  Genes Chromosomes Cancer       Date:  1992-04       Impact factor: 5.006

8.  Recent assembly of an imprinted domain from non-imprinted components.

Authors:  Robert W Rapkins; Tim Hore; Megan Smithwick; Eleanor Ager; Andrew J Pask; Marilyn B Renfree; Matthias Kohn; Horst Hameister; Robert D Nicholls; Janine E Deakin; Jennifer A Marshall Graves
Journal:  PLoS Genet       Date:  2006-10       Impact factor: 5.917

9.  Search for the sex-determining switch in monotremes: mapping WT1, SF1, LHX1, LHX2, FGF9, WNT4, RSPO1 and GATA4 in platypus.

Authors:  Daria Grafodatskaya; Willem Rens; Mary C Wallis; Vladimir Trifonov; Patricia C M O'Brien; Oliver Clarke; Jennifer A M Graves; Malcolm A Ferguson-Smith
Journal:  Chromosome Res       Date:  2007-08-29       Impact factor: 4.620

10.  Disruption and pseudoautosomal localization of the major histocompatibility complex in monotremes.

Authors:  Juliane C Dohm; Enkhjargal Tsend-Ayush; Richard Reinhardt; Frank Grützner; Heinz Himmelbauer
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583
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  10 in total

1.  Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Authors:  Can Alkan; Maria Francesca Cardone; Claudia Rita Catacchio; Francesca Antonacci; Stephen J O'Brien; Oliver A Ryder; Stefania Purgato; Monica Zoli; Giuliano Della Valle; Evan E Eichler; Mario Ventura
Journal:  Genome Res       Date:  2010-11-16       Impact factor: 9.043

2.  Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28.

Authors:  Margaret L Delbridge; Hardip R Patel; Paul D Waters; Daniel A McMillan; Jennifer A Marshall Graves
Journal:  Genome Res       Date:  2009-05-13       Impact factor: 9.043

Review 3.  Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries.

Authors:  Daniel E Janes; Nicole Valenzuela; Tariq Ezaz; Chris Amemiya; Scott V Edwards
Journal:  J Biomed Biotechnol       Date:  2010-10-12

4.  Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

Authors:  Pavlina Steflova; Viktor Tokan; Ivan Vogel; Matej Lexa; Jiri Macas; Petr Novak; Roman Hobza; Boris Vyskot; Eduard Kejnovsky
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

5.  Chromosomal integration of an avian oncogenic herpesvirus reveals telomeric preferences and evidence for lymphoma clonality.

Authors:  Charmaine M Robinson; Henry D Hunt; Hans H Cheng; Mary E Delany
Journal:  Herpesviridae       Date:  2010-12-07

6.  Uncovering the evolutionary history of neo-XY sex chromosomes in the grasshopper Ronderosia bergii (Orthoptera, Melanoplinae) through satellite DNA analysis.

Authors:  Octavio M Palacios-Gimenez; Diogo Milani; Bernardo Lemos; Elio R Castillo; Dardo A Martí; Erica Ramos; Cesar Martins; Diogo C Cabral-de-Mello
Journal:  BMC Evol Biol       Date:  2018-01-08       Impact factor: 3.260

7.  The bovine lactation genome: insights into the evolution of mammalian milk.

Authors:  Danielle G Lemay; David J Lynn; William F Martin; Margaret C Neville; Theresa M Casey; Gonzalo Rincon; Evgenia V Kriventseva; Wesley C Barris; Angie S Hinrichs; Adrian J Molenaar; Katherine S Pollard; Nauman J Maqbool; Kuljeet Singh; Regan Murney; Evgeny M Zdobnov; Ross L Tellam; Juan F Medrano; J Bruce German; Monique Rijnkels
Journal:  Genome Biol       Date:  2009-04-24       Impact factor: 13.583

8.  Genome analysis of the platypus reveals unique signatures of evolution.

Authors:  Wesley C Warren; LaDeana W Hillier; Jennifer A Marshall Graves; Ewan Birney; Chris P Ponting; Frank Grützner; Katherine Belov; Webb Miller; Laura Clarke; Asif T Chinwalla; Shiaw-Pyng Yang; Andreas Heger; Devin P Locke; Pat Miethke; Paul D Waters; Frédéric Veyrunes; Lucinda Fulton; Bob Fulton; Tina Graves; John Wallis; Xose S Puente; Carlos López-Otín; Gonzalo R Ordóñez; Evan E Eichler; Lin Chen; Ze Cheng; Janine E Deakin; Amber Alsop; Katherine Thompson; Patrick Kirby; Anthony T Papenfuss; Matthew J Wakefield; Tsviya Olender; Doron Lancet; Gavin A Huttley; Arian F A Smit; Andrew Pask; Peter Temple-Smith; Mark A Batzer; Jerilyn A Walker; Miriam K Konkel; Robert S Harris; Camilla M Whittington; Emily S W Wong; Neil J Gemmell; Emmanuel Buschiazzo; Iris M Vargas Jentzsch; Angelika Merkel; Juergen Schmitz; Anja Zemann; Gennady Churakov; Jan Ole Kriegs; Juergen Brosius; Elizabeth P Murchison; Ravi Sachidanandam; Carly Smith; Gregory J Hannon; Enkhjargal Tsend-Ayush; Daniel McMillan; Rosalind Attenborough; Willem Rens; Malcolm Ferguson-Smith; Christophe M Lefèvre; Julie A Sharp; Kevin R Nicholas; David A Ray; Michael Kube; Richard Reinhardt; Thomas H Pringle; James Taylor; Russell C Jones; Brett Nixon; Jean-Louis Dacheux; Hitoshi Niwa; Yoko Sekita; Xiaoqiu Huang; Alexander Stark; Pouya Kheradpour; Manolis Kellis; Paul Flicek; Yuan Chen; Caleb Webber; Ross Hardison; Joanne Nelson; Kym Hallsworth-Pepin; Kim Delehaunty; Chris Markovic; Pat Minx; Yucheng Feng; Colin Kremitzki; Makedonka Mitreva; Jarret Glasscock; Todd Wylie; Patricia Wohldmann; Prathapan Thiru; Michael N Nhan; Craig S Pohl; Scott M Smith; Shunfeng Hou; Mikhail Nefedov; Pieter J de Jong; Marilyn B Renfree; Elaine R Mardis; Richard K Wilson
Journal:  Nature       Date:  2008-05-08       Impact factor: 49.962

9.  Platypus globin genes and flanking loci suggest a new insertional model for beta-globin evolution in birds and mammals.

Authors:  Vidushi S Patel; Steven J B Cooper; Janine E Deakin; Bob Fulton; Tina Graves; Wesley C Warren; Richard K Wilson; Jennifer A M Graves
Journal:  BMC Biol       Date:  2008-07-25       Impact factor: 7.431

10.  Microchromosomes are building blocks of bird, reptile, and mammal chromosomes.

Authors:  Paul D Waters; Hardip R Patel; Aurora Ruiz-Herrera; Lucía Álvarez-González; Nicholas C Lister; Oleg Simakov; Tariq Ezaz; Parwinder Kaur; Celine Frere; Frank Grützner; Arthur Georges; Jennifer A Marshall Graves
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-09       Impact factor: 11.205
  10 in total

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