Literature DB >> 18184684

The ModFOLD server for the quality assessment of protein structural models.

Liam J McGuffin1.   

Abstract

UNLABELLED: The reliable assessment of the quality of protein structural models is fundamental to the progress of structural bioinformatics. The ModFOLD server provides access to two accurate techniques for the global and local prediction of the quality of 3D models of proteins. Firstly ModFOLD, which is a fast Model Quality Assessment Program (MQAP) used for the global assessment of either single or multiple models. Secondly ModFOLDclust, which is a more intensive method that carries out clustering of multiple models and provides per-residue local quality assessment. AVAILABILITY: http://www.biocentre.rdg.ac.uk/bioinformatics/ModFOLD/.

Mesh:

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Year:  2008        PMID: 18184684     DOI: 10.1093/bioinformatics/btn014

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  59 in total

1.  Improving threading algorithms for remote homology modeling by combining fragment and template comparisons.

Authors:  Hongyi Zhou; Jeffrey Skolnick
Journal:  Proteins       Date:  2010-07

2.  An iterative self-refining and self-evaluating approach for protein model quality estimation.

Authors:  Zheng Wang; Jianlin Cheng
Journal:  Protein Sci       Date:  2011-11-23       Impact factor: 6.725

3.  RecQL5 promotes genome stabilization through two parallel mechanisms--interacting with RNA polymerase II and acting as a helicase.

Authors:  M Nurul Islam; David Fox; Rong Guo; Takemi Enomoto; Weidong Wang
Journal:  Mol Cell Biol       Date:  2010-03-15       Impact factor: 4.272

4.  How significant is a protein structure similarity with TM-score = 0.5?

Authors:  Jinrui Xu; Yang Zhang
Journal:  Bioinformatics       Date:  2010-02-17       Impact factor: 6.937

5.  How well can the accuracy of comparative protein structure models be predicted?

Authors:  David Eramian; Narayanan Eswar; Min-Yi Shen; Andrej Sali
Journal:  Protein Sci       Date:  2008-10-01       Impact factor: 6.725

6.  Homology modeling of human Toll-like receptors TLR7, 8, and 9 ligand-binding domains.

Authors:  Tiandi Wei; Jing Gong; Ferdinand Jamitzky; Wolfgang M Heckl; Robert W Stark; Shaila C Rössle
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

7.  Fast geometric consensus approach for protein model quality assessment.

Authors:  Rafal Adamczak; Jaroslaw Pillardy; Brinda K Vallat; Jaroslaw Meller
Journal:  J Comput Biol       Date:  2011-01-18       Impact factor: 1.479

8.  Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

Authors:  Iwona Siuda; Lea Thøgersen
Journal:  J Mol Model       Date:  2013-09-19       Impact factor: 1.810

9.  QMEAN server for protein model quality estimation.

Authors:  Pascal Benkert; Michael Künzli; Torsten Schwede
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

10.  Mapping of interaction sites of the Schizosaccharomyces pombe protein Translin with nucleic acids and proteins: a combined molecular genetics and bioinformatics study.

Authors:  Elad Eliahoo; Ron Ben Yosef; Laura Pérez-Cano; Juan Fernández-Recio; Fabian Glaser; Haim Manor
Journal:  Nucleic Acids Res       Date:  2010-01-15       Impact factor: 16.971

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